Publications
Publications from USGS science centers throughout the Southeast Region.
Filter Total Items: 10382
CGS: Coupled growth and survival model with cohort fairness CGS: Coupled growth and survival model with cohort fairness
Fish modeling in complex environments is critical for understanding drivers of population dynamics in aquatic systems. This paper proposes a Bayesian network method for modeling fish survival and growth over multiple connected rivers. Traditional fish survival models capture the effect of multiple environmental drivers (e.g., stream temperature, stream flow) by adding different variables...
Authors
Erhu He, Yue Wan, Benjamin Letcher, Jennifer H. Fair, Yiquin Xie, Xiaowei Jia
The founding charter of the Omic Biodiversity Observation Network (Omic BON) The founding charter of the Omic Biodiversity Observation Network (Omic BON)
Omic BON is a thematic Biodiversity Observation Network under the Group on Earth Observations Biodiversity Observation Network (GEO BON), focused on coordinating the observation of biomolecules in organisms and the environment. Our founding partners include representatives from national, regional, and global observing systems; standards organizations; and data and sample management...
Authors
Raissa Meyer, Neil Davies, Kathleen J. Pitz, Christopher Meyer, Robyn Samuel, Jane Anderson, Ward Appeltans, Katharine Barker, Francisco P. Chavez, J. Emmett Duffy, Kelly D. Goodwin, Maui Hudson, Margaret Hunter, Johannes Karstensen, Christine M. Laney, Margaret Leinen, Paula Mabee, James A. Macklin, Frank Muller-Karger, Nicolas Pade, Jay Pearlman, Lori Phillips, Pieter Provoost, Ioulia Santi, Dmitry Schigel, Lynn M. Schriml, Alice Soccodato, Saara Suominen, Katherine M. Thibault, Visotheary Ung, Jodie van de Kamp, Elycia Wallis, Ramona Walls, Pier Luigi Buttigieg
Confirmation of significant sea turtle nesting activity on a remote island chain in the Gulf of Mexico Confirmation of significant sea turtle nesting activity on a remote island chain in the Gulf of Mexico
Globally, six of the seven sea turtle species are threatened or endangered and as such, monitoring reproductive activity for these species is necessary for effective population recovery. Remote beaches provide a challenge to conducting these surveys, which often results in data gaps that can hamper management planning. Throughout the summer of 2022, aerial surveys were conducted over the
Authors
Margaret Lamont, Dianne Ingram, Todd Baker, Matt Weigel, Brian M. Shamblin
Genetic analysis of federally endangered Cape Sable seaside sparrow subpopulations in the Greater Everglades, USA Genetic analysis of federally endangered Cape Sable seaside sparrow subpopulations in the Greater Everglades, USA
The federally endangered Cape Sable seaside sparrow (Ammospiza maritima mirabilis) is endemic to the Greater Everglades ecosystem in southern Florida, inhabiting fragmented marl prairies in six individual subpopulations. The subspecies is threatened by loss of breeding habitat from fire and water management. Genetic information is severely limited for the subspecies but could help inform...
Authors
Caitlin Beaver, Thomas Virzi, Margaret Hunter
A global biodiversity observing system to unite monitoring and guide action A global biodiversity observing system to unite monitoring and guide action
The rate and extent of global biodiversity change is surpassing our ability to measure, monitor and forecast trends. We propose an interconnected worldwide system of observation networks — a global biodiversity observing system (GBiOS) — to coordinate monitoring worldwide and inform action to reach international biodiversity targets.
Authors
Andrew Gonzalez, Petteri Vihervaara, Patricia Balvanera, Amanda E. Bates, Elisa Bayraktarov, Peter J. Bellingham, Andreas Bruder, Jillian Campbell, Michael D. Catchen, Jeannine Cavender-Bares, Jonathan Chase, Nicholas Coops, Mark J. Costello, Maria Dornelas, Gregoire Dubois, Emmett J. Duffy, Hilde Eggermont, Nestor Fernandez, Simon Ferrier, Gary N. Geller, Michael J. Gill, Dominique Gravel, Carlos A. Guerra, Robert P. Guralnick, Michael Harfoot, Tim Hirsch, Sean M. Hoban, Alice C. Hughes, Margaret Hunter, Forest Isbell, Walter Jetz, Norbert Juergens, W. Daniel Kissling, Cornelia B. Krug, Yvan Le Bras, Brian Leung, Maria C. Londoño-Murcia, Jean-Michel Lord, Michel Loreau, Amy Luers, Keping Ma, Anna J. MacDonald, Melodie McGeoch, Katie L. Millette, Zsolt Molnar, Akira S. Mori, Frank E. Muller-Karger, Hiroyuki Muraoka, Laetitia M. Navarro, Tim Newbold, Aidin Niamir, David Obura, Mary O’Connor, Marc Paganini, Henrique M. Pereira, Timothee Poisot, Laura J. Pollock, Andy Purvis, Adriana Radulovici, Duccio Rocchini, Michael E. Schaepman, Gabriela Schaepman-Strub, Dirk S. Schmeller, Ute Schmiedel, Fabien D. Schneider, Mangal M. Shakya, Andrew K Skidmore, Andrew L. Skowno, Yayoi Takeuchi, Mao-Ning Tuanmu, Eren Turak, Woody Turner, Mark C. Urban, Nicolas Urbina-Cardona, Ruben Valbuena, Basile van Havre, Elaine Wright
Parameter estimation at the conterminous United States scale and streamflow routing enhancements for the National Hydrologic Model infrastructure application of the Precipitation-Runoff Modeling System (NHM-PRMS) Parameter estimation at the conterminous United States scale and streamflow routing enhancements for the National Hydrologic Model infrastructure application of the Precipitation-Runoff Modeling System (NHM-PRMS)
This report documents a three-part continental-scale calibration procedure and a new streamflow routing algorithm using the U.S. Geological Survey National Hydrologic Model (NHM) infrastructure along with an application of the Precipitation-Runoff Modeling System (PRMS). The traditional approach to hydrologic model calibration and evaluation, which relies on comparing observed and...
Authors
Lauren E. Hay, Jacob H. LaFontaine, Ashley E. Van Beusekom, Parker A. Norton, William H. Farmer, R. Steve Regan, Steven L. Markstrom, Jesse E. Dickinson
Investigating microbial size classes associated with the transmission of stony coral tissue loss disease (SCTLD) Investigating microbial size classes associated with the transmission of stony coral tissue loss disease (SCTLD)
Effective treatment and prevention of any disease necessitates knowledge of the causative agent, yet the causative agents of most coral diseases remain unknown, in part due to the difficulty of distinguishing the pathogenic microbe(s) among the complex microbial backdrop of coral hosts. Stony coral tissue loss disease (SCTLD) is a particularly destructive disease of unknown etiology...
Authors
James S. Evans, Valerie J. Paul, Blake Ushijima, Kelly A. Pitts, Christina A. Kellogg
A Monte-Carlo chemical budget approach to assess ambient groundwater flow in bedrock open boreholes A Monte-Carlo chemical budget approach to assess ambient groundwater flow in bedrock open boreholes
In low-permeability rocks, ambient groundwater flow in open boreholes may go undetected using conventional borehole-flowmeter tools and alternative approaches may be needed to identify flow. Understanding ambient flow in open boreholes is important for tracking of cross contamination in groundwater. Chlorinated volatile organic compound (CVOC) concentrations from three open boreholes set...
Authors
Philip Harte
The Government eDNA Working Group 6th Annual eDNA Technical Exchange Workshop The Government eDNA Working Group 6th Annual eDNA Technical Exchange Workshop
The 6th annual Environmental DNA (eDNA) Technical Exchange Workshop was a virtual workshop hosted and coordinated by the Government eDNA Working Group (GEDWG) on January 24–26, 2023. GEDWG is a no-cost consortium that focuses on bringing together stakeholders associated with federal, state, provincial, municipal, and other government and non-government agencies interested in eDNA and...
Authors
Carol A. Stepien, Richard F. Lance, Katy E. Klymus, Margaret Hunter
Evaluating oil and gas industry two-dimensional multichannel seismic data for use in near-surface assessment of geologic framework and potential marine minerals resources Evaluating oil and gas industry two-dimensional multichannel seismic data for use in near-surface assessment of geologic framework and potential marine minerals resources
Marine seismic reflection data acquired across the Gulf of Mexico during oil and gas exploration are available to the public through an online database archive. The data are archived as two-dimensional multichannel seismic data in two digital formats. The formats include image files in portable document format (PDF), and binary files in industry standard Society for Exploration...
Authors
James G. Flocks, Arnell S. Forde, Stephen T. Bosse
Societal benefits of floodplains in the Chesapeake Bay and Delaware River watersheds: Sediment, nutrient, and flood regulation ecosystem services Societal benefits of floodplains in the Chesapeake Bay and Delaware River watersheds: Sediment, nutrient, and flood regulation ecosystem services
Floodplains provide critical ecosystem services to people by regulating floodwaters and retaining sediments and nutrients. Geospatial analyses, field data collection, and modeling were integrated to quantify a portfolio of services that floodplains provide to downstream communities within the Chesapeake Bay and Delaware River watersheds. The portfolio of services included floodplain...
Authors
Kristina G. Hopkins, Jacqueline Sage Welles, Emily Pindilli, Gregory E. Noe, Peter Claggett, Labeeb Ahmed, Marina J. Metes
Perspectives on the scientific legacy of J. Philip Grime Perspectives on the scientific legacy of J. Philip Grime
Perhaps as much as any other scientist in the 20th century, J.P. Grime transformed the study of plant ecology and helped shepherd the field toward international prominence as a nexus of ideas related to global environmental change. Editors at the Journal of Ecology asked a group of senior plant ecologists to comment on Grime's scientific legacy.This commentary piece includes individual...
Authors
Jason D. Fridley, Xiaojuan Liu, Natalia Perez-Harguindeguy, F. Stuart Chapin III, Mick Crawley, Gerlinde De Deyn, Sandra Diaz, James Grace, Peter Grubb, Susan P. Harrison, Sandra Lavorel, Zhimin Liu, Simon Pierce, Bernhard Schmid, Carly J. Stevens, David A. Wardle, Mark Westoby