Helen Sofaer, PhD
Helen Sofaer is a Research Ecologist at the Pacific Island Ecosystems Research Center in Hawai‘i.
Science and Products
INHABIT: A web tool for invasive plant management across the contiguous United States
INHABIT is a desktop-optimized web application and decision support tool with mapped and tabular summaries of habitat suitability models for over two hundred fifty terrestrial invasive plant species of management concern across the contiguous United States. It is the product of a scientist-practitioner partnership and is designed to facilitate enhanced invasive species management actions...
Assessing the Proliferation, Connectivity, and Consequences of Invasive Fine Fuels on the Sagebrush Biome
Invasive annual grasses can replace native vegetation and alter fire behavior, impacting a range of habitats and species. A team of researchers from the U.S. Geological Survey, Colorado State University, the Bureau of Land Management, and the U.S. Fish and Wildlife Service are working to identify factors that influence changes in the distribution and abundance of invasive annual grasses (IAGs)...
Developing Methods to Manage an Invasive Ant at Midway Atoll
Project Overview A new Trichomyrmex ant was first observed at Midway Atoll in 2019 and has caused management concerns due to its impacts on wildlife, endangered plants, and infrastructure since its arrival. Researchers supported by this Pacific Islands CASC project will map the range of the ant and test the effectiveness of using pesticidal baits to eradicate this destructive and...
Climate matching with the climatchR R package
Climate matching is a method for understanding species distributions and ranges and may be used as part of horizon scanning. Horizon scanning is the process of examining potential risk of invasion of new invasive species. Preventing new invasive species invasion requires less time and resources than attempting to control and remove established invasive species. Horizon scanning allows resource...
Proof of concept airborne eDNA testing to detect invasive species in shipping containers
Shipping containers that are transported by water vessels traveling between islands and the mainland or other islands can act as a vector for invasive species that are accidentally transported with the cargo. If the vessel carries a lot of cargo, or cargo has areas for different species to hide, inspections can be difficult, time consuming, and expensive, or in the case of non-agricultural...
Modeling First Records to Guide Invasive Species Biosurveillance in Hawai‘i
Early detection of invasive species can enable their successful eradication. With climate change and dynamic patterns of global trade, it is difficult to predict which new invasive species will next get introduced and where introduction and establishment will occur. We are analyzing where non-native species have first established in Hawai‘i to develop mapped predictions of the relative risk of new...
Filter Total Items: 25
Hawai‘i Volcanoes National Park, Barcoding of Ambrosia Beetles and Wood-boring Lepidoptera Larva, 2021-2023 Hawai‘i Volcanoes National Park, Barcoding of Ambrosia Beetles and Wood-boring Lepidoptera Larva, 2021-2023
Ambrosia beetles (Coleoptera: Curculionidae) have been implicated in the spread of Ceratocystis fungi that cause rapid ‘ōhiʻa death (ROD), a deadly fungal disease threatening the keystone Hawaiian tree ʻōhiʻa lehua (Metrosideros polymorpha). Research has investigated the role that ambrosia beetles play in the spread of the disease, including studies within Hawaiʻi Volcanoes National Park...
Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023 Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023
Acalolepta aesthetica (Coleoptera: Cerambycidae) is a beetle species whose larvae develop within branches and stems of host plants and can harm or kill host trees. Since this species was detected on the Island of Hawai'i in 2009, it has been documented to have a wide host breadth but its host preferences and its potential to use native plant species as hosts have not been formally...
Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023 Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023
Felling and tarping is a common management strategy for ʻōhiʻa lehua trees (Metrosideros polymorpha) infected with rapid ʻōhiʻa death (ROD) caused by Ceratocystis lukuohia and Ceratocystis huliohia fungal pathogens and spread via ambrosia beetles (Coleoptera: Curculionidae). In order to understand how tarping may decrease fungal viability or the spread of viable beetle frass, this study...
Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022 Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022
This data release includes data and metadata documenting 1) ambrosia beetle (Coleoptera: Curculionidae) species caught in multi-panel traps within ʻōhiʻa lehua (Metrosideros polymorpha) dominated forests in Hawaiʻi Volcanoes National Park as well as results from culturing Ceratocystis lukuohia or Ceratocystis huliohia, the fungi that cause rapid ʻōhiʻa death (ROD), from these traps, 2)...
Horizon Scan for Vertebrates in Trade Horizon Scan for Vertebrates in Trade
This is a dataset summarizing filtering criteria and rapid risk assessments for ~25,000 species undertaken during a data-driven horizon scan of imported fish, amphibians, reptiles, birds, and mammals. The files represented in this dataset are the following: 1) 'species_filtering_metadata_table.xlsx' is the tabular summary of all intake list species names and the reason for inclusion...
Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022 Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022
This dataset was used for modeling the spatial distribution of first records of non-native plants in the conterminous U.S. The input dataset (alldata_input_frdm.csv) contains 4,763 rows of data, representing 1,538 counties in the contiguous U.S., 25 decades, and 3,389 first records of invasive terrestrial plant species (Williams et al., 2024) found in the US-RIIS list (Simpson et al...
Filter Total Items: 44
Non-native bird populations respond differently to their environment and exhibit shifts in ecological niche limits across continents Non-native bird populations respond differently to their environment and exhibit shifts in ecological niche limits across continents
Aim The degree to which species' niches remain stable over space and time–the niche conservatism hypothesis–is critical for predicting species' responses to environmental change. Tests of this hypothesis typically focus on changes in niche centroids and boundaries. An outstanding question is whether species' environmental associations differ within the interior of their niche space–that...
Authors
Kristin P. Davis, Helen Sofaer, Henrik G. Smith, Henning Heldbjerg, Anna Gamero, Ainārs Auniņš, Lluís Brotons, Tomasz Chodkiewicz, Daniel Palm Eskildsen, Benoît Fontaine, John Atle Kålås, Primož Kmecl, Petras Kurlavičius, Aleksi Lehikoinen, Åke Lindström, Ingar Jostein Øien, Jiří Reif, Nicolas Strebel, Tibor Szép, Chris A.M. van Turnhout, Thomas Vikstrøm, Liba Pejchar
Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions
Are non-native plants abundant because they are non-native, and have advantages over native plants, or because they possess ‘fast’ resource strategies, and have advantages in disturbed environments? This question is central to invasion biology but remains unanswered.We quantified the relative importance of resource strategy and biogeographic origin in 69 441 plots across the conterminous...
Authors
Dana M. Blumenthal, Jeffrey M. Diez, Ian S. Pearse, Helen Sofaer, Cascade J.B. Sorte, Dave Barnett, Evelyn M. Beaury, Bethany Bradley, Jeff Corbin, Jeffrey Dukes, Regan Early, Ines Ibanez, Daniel C. Laughlin, Lais Petri, Montserrat Vila
Drought and deluge— Opportunities for climate-change adaptation in US national parks Drought and deluge— Opportunities for climate-change adaptation in US national parks
In a changing climate, resource management depends on anticipating changes and considering uncertainties. To facilitate effective decision making on public lands, we regionally summarized the magnitude and uncertainty of projected change in management-relevant climate variables for 332 national park units across the contiguous US. Temperature, frequency of extreme precipitation events...
Authors
Meagan Ford Oldfather, Amber N. Runyon, Kyra Clark-Wolf, Wynne Emily Moss, Imtiaz Rangwala, Anthony Ciocco, Aparna Bamzai-Dodson, Helen Sofaer, Brian W. Miller
Abundance of ohiʻa-associated ambrosia beetles in two sites with rapid ohiʻa death outbreaks Abundance of ohiʻa-associated ambrosia beetles in two sites with rapid ohiʻa death outbreaks
ʻŌhiʻa lehua (Metrosideros polymorpha Gaudich.) is the dominant tree in native Hawaiian forests but is threatened by two pathogenic fungi (Ceratocystis spp.) which cause Rapid ʻŌhiʻa Death (ROD). Understanding the spread of ROD is vital to informing prevention and management strategies. Ambrosia beetles (Coleoptera: Curculionidae: Scolytinae) contribute to the spread of disease by...
Authors
Helen Sofaer, Sophia Smith, Robert W. Peck, Ellen Dunkle, Jorden Zarders, Naiʻa Odachi, Ryan L. Perroy
Ecological scenarios: Embracing ecological uncertainty in an era of global change Ecological scenarios: Embracing ecological uncertainty in an era of global change
Scenarios, or plausible characterizations of the future, can help natural resource stewards plan and act under uncertainty. Current methods for developing scenarios for climate change adaptation planning are often focused on exploring uncertainties in future climate, but new approaches are needed to better represent uncertainties in ecological responses. Scenarios that characterize how...
Authors
Kyra Clark-Wolf, Wynne Emily Moss, Brian W. Miller, Imtiaz Rangwala, Helen Sofaer, Gregor W. Schuurman, Dawn Magness, Amy Symstad, Jonathan Coop, Dominique M. Bachelet, Joseph Barsugli, Anthony Warren Ciocco, Shelley D. Crausbay, Tyler Hoecker, Jena Lewinsohn, Meagan Ford Oldfather, Orien Richmond, Renee Rondeau, Amber C Runyon, Robin Russell, Jennifer L. Wilkening
Clarifying the role of the resist–accept–direct framework in supporting resource management planning processes Clarifying the role of the resist–accept–direct framework in supporting resource management planning processes
No abstract available.
Authors
Gregor W. Schuurman, Wylie Carr, Cat Hawkins Hoffman, David J. Lawrence, Brian W. Miller, Erik A. Beever, Jean Brennan, Katherine R. Clifford, Scott Covington, Shelley D. Crausbay, Amanda E. Cravens, John E. Gross, Linh Hoang, Stephen Jackson, Abraham J. Miller-Rushing, Wendy Morrison, Elizabeth A. Nelson, Robin O'Malley, Jay O. Peterson, Mark T. Porath, Karen Prentice, Joel H. Reynolds, Suresh A. Sethi, Helen Sofaer, Jennifer L. Wilkening
High-throughput calculations of climatch scores High-throughput calculations of climatch scores
Matching climate envelopes allows people to examine how potential invasive species may match habitats. This repository contains code for using the climatchR package for high-throughput calculations of climatch scores for species using GBIF data. Climatch is based upon the climatch algorithm as implemented through the climatchR package.
climatchR: An implementation of Climatch in R climatchR: An implementation of Climatch in R
Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to...
Science and Products
INHABIT: A web tool for invasive plant management across the contiguous United States
INHABIT is a desktop-optimized web application and decision support tool with mapped and tabular summaries of habitat suitability models for over two hundred fifty terrestrial invasive plant species of management concern across the contiguous United States. It is the product of a scientist-practitioner partnership and is designed to facilitate enhanced invasive species management actions...
Assessing the Proliferation, Connectivity, and Consequences of Invasive Fine Fuels on the Sagebrush Biome
Invasive annual grasses can replace native vegetation and alter fire behavior, impacting a range of habitats and species. A team of researchers from the U.S. Geological Survey, Colorado State University, the Bureau of Land Management, and the U.S. Fish and Wildlife Service are working to identify factors that influence changes in the distribution and abundance of invasive annual grasses (IAGs)...
Developing Methods to Manage an Invasive Ant at Midway Atoll
Project Overview A new Trichomyrmex ant was first observed at Midway Atoll in 2019 and has caused management concerns due to its impacts on wildlife, endangered plants, and infrastructure since its arrival. Researchers supported by this Pacific Islands CASC project will map the range of the ant and test the effectiveness of using pesticidal baits to eradicate this destructive and...
Climate matching with the climatchR R package
Climate matching is a method for understanding species distributions and ranges and may be used as part of horizon scanning. Horizon scanning is the process of examining potential risk of invasion of new invasive species. Preventing new invasive species invasion requires less time and resources than attempting to control and remove established invasive species. Horizon scanning allows resource...
Proof of concept airborne eDNA testing to detect invasive species in shipping containers
Shipping containers that are transported by water vessels traveling between islands and the mainland or other islands can act as a vector for invasive species that are accidentally transported with the cargo. If the vessel carries a lot of cargo, or cargo has areas for different species to hide, inspections can be difficult, time consuming, and expensive, or in the case of non-agricultural...
Modeling First Records to Guide Invasive Species Biosurveillance in Hawai‘i
Early detection of invasive species can enable their successful eradication. With climate change and dynamic patterns of global trade, it is difficult to predict which new invasive species will next get introduced and where introduction and establishment will occur. We are analyzing where non-native species have first established in Hawai‘i to develop mapped predictions of the relative risk of new...
Filter Total Items: 25
Hawai‘i Volcanoes National Park, Barcoding of Ambrosia Beetles and Wood-boring Lepidoptera Larva, 2021-2023 Hawai‘i Volcanoes National Park, Barcoding of Ambrosia Beetles and Wood-boring Lepidoptera Larva, 2021-2023
Ambrosia beetles (Coleoptera: Curculionidae) have been implicated in the spread of Ceratocystis fungi that cause rapid ‘ōhiʻa death (ROD), a deadly fungal disease threatening the keystone Hawaiian tree ʻōhiʻa lehua (Metrosideros polymorpha). Research has investigated the role that ambrosia beetles play in the spread of the disease, including studies within Hawaiʻi Volcanoes National Park...
Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023 Island of Hawai'i, Host preferences of Acalolepta aesthetica 2020-2023
Acalolepta aesthetica (Coleoptera: Cerambycidae) is a beetle species whose larvae develop within branches and stems of host plants and can harm or kill host trees. Since this species was detected on the Island of Hawai'i in 2009, it has been documented to have a wide host breadth but its host preferences and its potential to use native plant species as hosts have not been formally...
Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023 Hawaiʻi Volcanoes National Park Effects of Felling and Tarping Trees on ROD Viability and Ambrosia Beetle Activity 2022-2023
Felling and tarping is a common management strategy for ʻōhiʻa lehua trees (Metrosideros polymorpha) infected with rapid ʻōhiʻa death (ROD) caused by Ceratocystis lukuohia and Ceratocystis huliohia fungal pathogens and spread via ambrosia beetles (Coleoptera: Curculionidae). In order to understand how tarping may decrease fungal viability or the spread of viable beetle frass, this study...
Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022 Island of Hawai'i Ambrosia Beetle Trapping Data and Locations of Suspected Ceratocystis-positive ʻōhiʻa at Two Sites, 2021-2022
This data release includes data and metadata documenting 1) ambrosia beetle (Coleoptera: Curculionidae) species caught in multi-panel traps within ʻōhiʻa lehua (Metrosideros polymorpha) dominated forests in Hawaiʻi Volcanoes National Park as well as results from culturing Ceratocystis lukuohia or Ceratocystis huliohia, the fungi that cause rapid ʻōhiʻa death (ROD), from these traps, 2)...
Horizon Scan for Vertebrates in Trade Horizon Scan for Vertebrates in Trade
This is a dataset summarizing filtering criteria and rapid risk assessments for ~25,000 species undertaken during a data-driven horizon scan of imported fish, amphibians, reptiles, birds, and mammals. The files represented in this dataset are the following: 1) 'species_filtering_metadata_table.xlsx' is the tabular summary of all intake list species names and the reason for inclusion...
Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022 Conterminous U.S. data used for modeling non-native vascular plant first records 1780-2022
This dataset was used for modeling the spatial distribution of first records of non-native plants in the conterminous U.S. The input dataset (alldata_input_frdm.csv) contains 4,763 rows of data, representing 1,538 counties in the contiguous U.S., 25 decades, and 3,389 first records of invasive terrestrial plant species (Williams et al., 2024) found in the US-RIIS list (Simpson et al...
Filter Total Items: 44
Non-native bird populations respond differently to their environment and exhibit shifts in ecological niche limits across continents Non-native bird populations respond differently to their environment and exhibit shifts in ecological niche limits across continents
Aim The degree to which species' niches remain stable over space and time–the niche conservatism hypothesis–is critical for predicting species' responses to environmental change. Tests of this hypothesis typically focus on changes in niche centroids and boundaries. An outstanding question is whether species' environmental associations differ within the interior of their niche space–that...
Authors
Kristin P. Davis, Helen Sofaer, Henrik G. Smith, Henning Heldbjerg, Anna Gamero, Ainārs Auniņš, Lluís Brotons, Tomasz Chodkiewicz, Daniel Palm Eskildsen, Benoît Fontaine, John Atle Kålås, Primož Kmecl, Petras Kurlavičius, Aleksi Lehikoinen, Åke Lindström, Ingar Jostein Øien, Jiří Reif, Nicolas Strebel, Tibor Szép, Chris A.M. van Turnhout, Thomas Vikstrøm, Liba Pejchar
Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions Why are non-native plants successful? Consistently fast economic traits and novel origin jointly explain abundance across US ecoregions
Are non-native plants abundant because they are non-native, and have advantages over native plants, or because they possess ‘fast’ resource strategies, and have advantages in disturbed environments? This question is central to invasion biology but remains unanswered.We quantified the relative importance of resource strategy and biogeographic origin in 69 441 plots across the conterminous...
Authors
Dana M. Blumenthal, Jeffrey M. Diez, Ian S. Pearse, Helen Sofaer, Cascade J.B. Sorte, Dave Barnett, Evelyn M. Beaury, Bethany Bradley, Jeff Corbin, Jeffrey Dukes, Regan Early, Ines Ibanez, Daniel C. Laughlin, Lais Petri, Montserrat Vila
Drought and deluge— Opportunities for climate-change adaptation in US national parks Drought and deluge— Opportunities for climate-change adaptation in US national parks
In a changing climate, resource management depends on anticipating changes and considering uncertainties. To facilitate effective decision making on public lands, we regionally summarized the magnitude and uncertainty of projected change in management-relevant climate variables for 332 national park units across the contiguous US. Temperature, frequency of extreme precipitation events...
Authors
Meagan Ford Oldfather, Amber N. Runyon, Kyra Clark-Wolf, Wynne Emily Moss, Imtiaz Rangwala, Anthony Ciocco, Aparna Bamzai-Dodson, Helen Sofaer, Brian W. Miller
Abundance of ohiʻa-associated ambrosia beetles in two sites with rapid ohiʻa death outbreaks Abundance of ohiʻa-associated ambrosia beetles in two sites with rapid ohiʻa death outbreaks
ʻŌhiʻa lehua (Metrosideros polymorpha Gaudich.) is the dominant tree in native Hawaiian forests but is threatened by two pathogenic fungi (Ceratocystis spp.) which cause Rapid ʻŌhiʻa Death (ROD). Understanding the spread of ROD is vital to informing prevention and management strategies. Ambrosia beetles (Coleoptera: Curculionidae: Scolytinae) contribute to the spread of disease by...
Authors
Helen Sofaer, Sophia Smith, Robert W. Peck, Ellen Dunkle, Jorden Zarders, Naiʻa Odachi, Ryan L. Perroy
Ecological scenarios: Embracing ecological uncertainty in an era of global change Ecological scenarios: Embracing ecological uncertainty in an era of global change
Scenarios, or plausible characterizations of the future, can help natural resource stewards plan and act under uncertainty. Current methods for developing scenarios for climate change adaptation planning are often focused on exploring uncertainties in future climate, but new approaches are needed to better represent uncertainties in ecological responses. Scenarios that characterize how...
Authors
Kyra Clark-Wolf, Wynne Emily Moss, Brian W. Miller, Imtiaz Rangwala, Helen Sofaer, Gregor W. Schuurman, Dawn Magness, Amy Symstad, Jonathan Coop, Dominique M. Bachelet, Joseph Barsugli, Anthony Warren Ciocco, Shelley D. Crausbay, Tyler Hoecker, Jena Lewinsohn, Meagan Ford Oldfather, Orien Richmond, Renee Rondeau, Amber C Runyon, Robin Russell, Jennifer L. Wilkening
Clarifying the role of the resist–accept–direct framework in supporting resource management planning processes Clarifying the role of the resist–accept–direct framework in supporting resource management planning processes
No abstract available.
Authors
Gregor W. Schuurman, Wylie Carr, Cat Hawkins Hoffman, David J. Lawrence, Brian W. Miller, Erik A. Beever, Jean Brennan, Katherine R. Clifford, Scott Covington, Shelley D. Crausbay, Amanda E. Cravens, John E. Gross, Linh Hoang, Stephen Jackson, Abraham J. Miller-Rushing, Wendy Morrison, Elizabeth A. Nelson, Robin O'Malley, Jay O. Peterson, Mark T. Porath, Karen Prentice, Joel H. Reynolds, Suresh A. Sethi, Helen Sofaer, Jennifer L. Wilkening
High-throughput calculations of climatch scores High-throughput calculations of climatch scores
Matching climate envelopes allows people to examine how potential invasive species may match habitats. This repository contains code for using the climatchR package for high-throughput calculations of climatch scores for species using GBIF data. Climatch is based upon the climatch algorithm as implemented through the climatchR package.
climatchR: An implementation of Climatch in R climatchR: An implementation of Climatch in R
Matching climate envelopes of allows people to examine how potential invasive species may match habitats. The Australian government created Climatch to do allow for these comparisons. However, this webpage does not allow for readily scripting climate matching. Hence, the authors created climatchR, an R package (R Core Team 2020) implementing the climatch method in R. This was created to...