My research program focuses on the interactions among immunology, toxicology, disease ecology, and ecosystem health.
I analyze the physiologic and metabolic effects of stressors on organisms and how subsequent vulnerabilities translate into population and ecosystem health. Stressors can be either chemical (pesticides, petroleum hydrocarbons), physical (e.g., elevated water temperature), or biological (toxins, pathogens). My long-term goal is to better understand the effects of anthropogenic and natural stressors on individuals and how those stressors are reflected in an individual organism’s fitness (survival and reproduction), the population level effects of differential survival and reproduction of individuals, and the ecosystem level effects of population change.
RESEARCH INTERESTS
- Eco-immunology
- Nearshore marine ecosystem health
- Conservation biology
- Eco-toxicology
- Individual and population level susceptibility
Professional Experience
Ecologist, U. S. Geological Survey, 2004–present
Assistant Project Scientist, UC Davis, 2005– 2009
Postdoctoral Fellow, UC Davis, 2003-2004
Post Graduate Researcher, UC Davis. 1998-2003
Post Graduate Researcher, UC Davis, 1998
Research Assistant, UC Davis, 1996
Teaching Assistant, UC Davis, 1994-1996
Education and Certifications
Ph.D., Ecology, University of California, Davis. 2003.
Thesis: Immunogenetics in the California sea lion (Zalophus californianus): evolution of the major histocompatibility complex under differential
Master of Science, Ecology, University of California, Davis. 1995.
Thesis: Defenses of insular endemic plants in the absence of herbivory
Bachelor of Arts, Biology. University of California, Santa Cruz. 1989.
Science and Products
Assessing heat stress in migrating Yukon River Chinook Salmon
Polar Bear Health and Disease Diagnostics
Developing Physiological Diagnostics for the Desert Tortoise
Environmental Stressors and Wildlife Health
Davis Field Station
Gene Transcription and Heat Shock Protein 70 Abundance Results from Migrating Adult Chinook Salmon, Yukon Watershed, 2016-2017
Data for Gene Transcription Patterns in Response to Low Level Petroleum Contaminants in Mytilus trossulus from Field Sites and Harbors in Southcentral Alaska
Data for Southern Sea Otter Range Expansion and Habitat Use in the Santa Barbara Channel
Divergent gene expression profiles in Alaskan sea otters: An indicator of chronic domoic acid exposure?
Using transcriptomics to predict and visualize disease status in bighorn sheep (Ovis canadensis)
Baseline gene expression levels in Falkland-Malvinas Island penguins: Towards a new monitoring paradigm
Gene expression profiles in two razor clam populations: Discerning drivers of population status
Translocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris
Sea otter population collapse in southwest Alaska: Assessing ecological covariates, consequences, and causal factors
Sea otter (Enhydra lutris) populations in southwest Alaska declined substantially between about 1990 and the most recent set of surveys in 2015. Here we report changes in the distribution and abundance of sea otters, and covarying patterns in reproduction, mortality, body size and condition, diet and foraging behavior, food availability, health profiles, and exposure to environmental contaminants
A manipulative thermal challenge protocol for adult salmonids in remote field settings
Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)
Evidence of prevalent heat stress in Yukon River Chinook salmon
Gene transcript profiling in desert bighorn sheep
Monitoring nearshore ecosystem health using Pacific razor clams (Siliqua patula) as an indicator species
Physiological and gene transcription assays to assess responses of mussels to environmental changes
Science and Products
- Science
Assessing heat stress in migrating Yukon River Chinook Salmon
We will examine evidence of heat stress in Yukon River Chinook salmon (Oncorhynchus tshawytscha) using heat shock proteins and gene expression.Polar Bear Health and Disease Diagnostics
In 2012, scientists noticed that nearly a third of polar bears sampled in a study in Alaska were suffering from hair loss and poor health. Drs. Lizabeth Bowen and A. Keith Miles of WERC used new technology to track down and identify the factors responsible for driving disease in Alaskan polar bears.Developing Physiological Diagnostics for the Desert Tortoise
The Mojave desert tortoise is listed as “threatened” under the Endangered Species Act and faces threats from habitat loss, predators, and disease. Drs. Lizabeth Bowen and A. Keith Miles with WERC are designing new methods to determine the type and influence of stressors present in the environment for the tortoise and other wildlife.Environmental Stressors and Wildlife Health
Environmental stressors such as contaminants and disease can cause physiological imbalance in all types of wildlife. WERC’s Drs. Lizabeth Bowen and A. Keith Miles develop gene transcription profiles to detect organisms’ physiological responses to environmental stressors and provide resource managers with early warnings for potential effects on wildlife and ecosystem health.Davis Field Station
The Davis Field Station is home to research programs that focus on coastal ecosystem dynamics, ecological stressors, and their effects on wildlife populations. These studies primarily take place along the Pacific coast from the Aleutian Islands to southern California. Current projects investigate sea-level rise along both coasts of North America, landscape-scale aquatic and terrestrial ecology... - Data
Gene Transcription and Heat Shock Protein 70 Abundance Results from Migrating Adult Chinook Salmon, Yukon Watershed, 2016-2017
This data set documents the gene transcription levels for a panel of 12 selected genes and the heat shock protein 70 (HSP70) protein abundance measured in the muscle tissue of individual wild Chinook salmon captured from locations within the U.S. portion of the Yukon River watershed. Chinook salmon were primarily captured in 2016 and 2017 from existing field efforts (n = 477). A small number of adData for Gene Transcription Patterns in Response to Low Level Petroleum Contaminants in Mytilus trossulus from Field Sites and Harbors in Southcentral Alaska
Marine mussels are a ubiquitous and crucial component of the nearshore environment, and new genomic technologies exist to quantify molecular responses of individual mussels to stimuli, including exposure to polycyclic aromatic hydrocarbons (PAHs). We used gene-based assays of exposure and physiological function to assess lingering oil damage from the 1989 Exxon Valdez oil spill using the Pacific bData for Southern Sea Otter Range Expansion and Habitat Use in the Santa Barbara Channel
The current study was designed to provide critical information for resource managers (specifically the Bureau of Ocean Energy Management, henceforth BOEM, and the U.S. Fish and Wildlife Service, henceforth USFWS) about the spatial ecology, population status, and potential population threats to sea otters in Santa Barbara Channel, with particular reference to exposure to manmade structures and sour - Publications
Filter Total Items: 35
Divergent gene expression profiles in Alaskan sea otters: An indicator of chronic domoic acid exposure?
An opportunistic investigation into ecosystem instability in Kachemak Bay (KBay), Alaska, has led us to investigate exposure to toxic algae in sea otters. We used gene expression to explore the physiological health of sea otters sampled in KBay in May 2019. We found altered levels of gene transcripts in comparison with reference sea otters from clinically normal, oil-exposed, and nutritionally chaUsing transcriptomics to predict and visualize disease status in bighorn sheep (Ovis canadensis)
Increasing risk of pathogen spillover coupled with overall declines in wildlife population abundance in the Anthropocene make infectious disease a relevant concern for species conservation worldwide. While emerging molecular tools could improve our diagnostic capabilities and give insight into mechanisms underlying wildlife disease risk, they have rarely been applied in practice. Here, employing aBaseline gene expression levels in Falkland-Malvinas Island penguins: Towards a new monitoring paradigm
Health diagnostics of wildlife have historically relied on the evaluation of select serum biomarkers and the identification of a contaminant or pathogen burden within specific tissues as an indicator of a level of insult. However, these approaches fail to measure the physiological reaction of the individual to stressors, thus limiting the scope of interpretation. Gene-based health diagnostics provGene expression profiles in two razor clam populations: Discerning drivers of population status
With rapidly changing marine ecosystems, shifts in abundance and distribution are being documented for a variety of intertidal species. We examined two adjacent populations of Pacific razor clams (Siliqua patula) in lower Cook Inlet, Alaska. One population (east) supported a sport and personal use fishery, but this has been closed since 2015 due to declines in abundance, and the second populationTranslocations maintain genetic diversity and increase connectivity in sea otters, Enhydra lutris
Sea otters, Enhydra lutris, were once abundant along the nearshore areas of the North Pacific. The international maritime fur trade that ended in 1911 left 13 small remnant populations with low genetic diversity. Subsequent translocations into previously occupied habitat resulted in several reintroduced populations along the coast of North America. We sampled sea otters between 2008 and 2011 throuSea otter population collapse in southwest Alaska: Assessing ecological covariates, consequences, and causal factors
Sea otter (Enhydra lutris) populations in southwest Alaska declined substantially between about 1990 and the most recent set of surveys in 2015. Here we report changes in the distribution and abundance of sea otters, and covarying patterns in reproduction, mortality, body size and condition, diet and foraging behavior, food availability, health profiles, and exposure to environmental contaminants
A manipulative thermal challenge protocol for adult salmonids in remote field settings
Manipulative experiments provide stronger evidence for identifying cause-and-effect relationships than correlative studies, but protocols for implementing temperature manipulations are lacking for large species in remote settings. We developed an experimental protocol for holding adult Chinook salmon (Oncorhynchus tshawytscha) and exposing them to elevated temperature treatments. The goal of the eTranscriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha)
Chinook salmon (Oncorhynchus tshawytscha) declines are widespread and may be attributed, at least in part, to warming river temperatures. Water temperatures in the Yukon River and tributaries often exceed 18°C, a threshold commonly associated with heat stress and elevated mortality in Pacific salmon. Untangling the complex web of direct and indirect physiological effects of heat stress on salmon iEvidence of prevalent heat stress in Yukon River Chinook salmon
Migrating adult Pacific salmon (Oncorhynchus spp.) are sensitive to warm water (>18 °C), with a range of consequences from decreased spawning success to early mortality. We examined the proportion of Yukon River Chinook salmon (O. tshawytscha) exhibiting evidence of heat stress to assess the potential that high temperatures contribute to freshwater adult mortality in a northern Pacific salmon popuGene transcript profiling in desert bighorn sheep
Respiratory disease is a key factor affecting the conservation and recovery of bighorn sheep (Ovis canadensis ) populations. Innovative, minimally invasive tools such as gene transcription–based diagnostics have the potential to improve our understanding of the broad range of factors that can affect the health of wild sheep. Evaluation of transcript levels for genes representative of multiple inteMonitoring nearshore ecosystem health using Pacific razor clams (Siliqua patula) as an indicator species
An emerging approach to ecosystem monitoring involves the use of physiological biomarker analyses in combination with gene transcription assays. For the first time, we employed these tools to evaluate the Pacific razor clam (Siliqua patula), which is important both economically and ecologically, as a bioindicator species in the northeast Pacific. Our objectives were to (1) develop biomarker and gePhysiological and gene transcription assays to assess responses of mussels to environmental changes
Coastal regions worldwide face increasing management concerns due to natural and anthropogenic forces that have the potential to significantly degrade nearshore marine resources. The goal of our study was to develop and test a monitoring strategy for nearshore marine ecosystems in remote areas that are not readily accessible for sampling. Mussel species have been used extensively to assess ecosyst