Publications
The USGS publishes peer-reviewed reports and journal articles which are used by Chesapeake Bay Program resource managers and policy makers to make science-based decisions for ecosystem conservation and restoration. Use the Search box below to find publications on selected topics.
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Filter Total Items: 961
Assessing streams in the Chesapeake Bay Watershed to guide conservation and restoration activities Assessing streams in the Chesapeake Bay Watershed to guide conservation and restoration activities
Freshwater streams in the Chesapeake Bay watershed are home to numerous aquatic organisms (like fish, amphibians, mussels, and insects) and provide drinking water and recreational opportunities to people living in or visiting the watershed. Land-use changes, such as urban development and increased activities in certain agricultural sectors, have degraded water quality and altered...
Authors
Kelly O. Maloney, Rosemary M. Fanelli, Matthew J. Cashman, Lindsey J. Boyle, Stephanie E. Gordon, Benjamin P. Gressler, Michelle P. Katoski, Alexander H. Kiser, Marina J. Metes, Gregory B. Noe, Andrew J. Sekellick, Allison Sussman, John A. Young
Achieving interpretable machine learning by functional decomposition of black-box models into explainable predictor effects Achieving interpretable machine learning by functional decomposition of black-box models into explainable predictor effects
Machine learning (ML) models are often based on complex black-box architectures that are difficult to interpret. This interpretability problem can hinder the use of ML in fields like medicine, ecology, and insurance, and has boosted research in interpretable machine learning (IML). Here, we propose a novel approach for the functional decomposition of black-box predictions, which is a...
Authors
David Kohler, David Rügamer, Lindsey J. Boyle, Kelly O. Maloney, Matthias Schmid
Assessing the topographic distribution of legacy soil phosphorus in agricultural fields of the Delmarva Peninsula, Mid-Atlantic Coastal Plain, USA Assessing the topographic distribution of legacy soil phosphorus in agricultural fields of the Delmarva Peninsula, Mid-Atlantic Coastal Plain, USA
Phosphorus (P) management remains a challenge in agricultural watersheds. The Choptank River Conservation Effects Assessment Project watershed, located in Maryland and Delaware and draining to the Chesapeake Bay, contains legacy soil P from historical dairy and poultry manure applications. These practices elevated soil P beyond crop needs, contributing to persistent P export to aquatic...
Authors
Maryam Foroughi, Ling Du, Isis P Scott, W. Dean Hively, Zachary P. Simpson, Zacharias J. Smith, Cathleen J. Hapeman, Martin C. Rabenhorst, Raymond R. Weil, Greg W. McCarty
Using monitoring and partnerships to provide management-relevant information about Chesapeake Bay rivers Using monitoring and partnerships to provide management-relevant information about Chesapeake Bay rivers
The lands and waters of the Chesapeake Bay watershed provide more than $100 billion in economic benefits- an amount that is expected to increase by achieving the region’s clean-water goals. Achieving those goals requires accurate and timely information about the health of the watershed’s rivers and streams. The Chesapeake Bay nontidal monitoring network (NTN), a partnership of local...
Authors
James S. Webber, Kaylyn S. Gootman, Kenneth Hyer, Peter J. Tango, Douglas L. Moyer
Satellite assessment of winter cover crop and conservation tillage outcomes to support adaptive management in working landscapes Satellite assessment of winter cover crop and conservation tillage outcomes to support adaptive management in working landscapes
The use of winter cover crops and conservation tillage are agricultural practices promoted to reduce nutrient and sediment loss from cropland, improve soil health, increase infiltration, and support farm nutrient cycling and ecosystem services. However, environmental performance of these practices is variable in the working farm landscape. The Lower Chesapeake Bay research project within...
Authors
W. Dean Hively, Feng Gao, Gregory W. McCarty, Craig S.T. Daughtry, Xuesong Zhang, Jyoti Jennewein, Alison Thieme, Brian T. Lamb, Jason Keppler, Cathleen J. Hapeman, Michael Cosh, Steven B. Mirsky
Leveraging artificial intelligence and machine learning to advance Chesapeake Bay research and management: A review of status, challenges, and opportunities Leveraging artificial intelligence and machine learning to advance Chesapeake Bay research and management: A review of status, challenges, and opportunities
The Chesapeake Bay and its watershed (hereafter “Chesapeake Bay region”) have been the focus of extensive restoration efforts for several decades. These restoration efforts are guided by the Chesapeake Bay Watershed Agreement (Chesapeake Executive Council 2014) which outlines 10 goals and 31 measurable outcomes. The Chesapeake Bay is globally recognized as a model for coastal restoration...
Authors
Qian Zhang, Matthew Baker, Bertani Isabella, Bill Dennison, Lewis C. Linker, Kelly O. Maloney, Robert D. Sabo, Chaopeng Shen, Gary W. Shenk, Kim Van Meter, Meg Cole
A simple predictive model for salt marsh internal deterioration under sea-level rise and sediment deficits: Application to Chesapeake Bay A simple predictive model for salt marsh internal deterioration under sea-level rise and sediment deficits: Application to Chesapeake Bay
Salt marshes are dynamic biogeomorphic systems reliant on autochthonous and allochthonous input to maintain their three-dimensional configuration. Sea-level rise, subsidence, and sediment deficits can lead to submergence, open-water expansion, and ultimately loss of the vegetated marsh plain and associated ecosystem services. Widely used management-focused models focus on vegetation...
Authors
Neil K. Ganju, Kate Ackerman, Zafer Defne, Giulio Mariotti, David Curson, Zachary Posnik, Joel A. Carr, Joanna Grand
Using satellite imagery and soil data to understand occurrences and migration of soil conditions harmful to archaeological sites on Jamestown Island, Virginia Using satellite imagery and soil data to understand occurrences and migration of soil conditions harmful to archaeological sites on Jamestown Island, Virginia
Many know Jamestown Island, Virginia, hereafter referred to as “the Island,” located near the mouth of the James River into the Chesapeake Bay, as the home of the first permanent English settlement in North America. However, the Island is home to 15,000 years’ worth of cultural artifacts and archaeological sites. In addition to its rich history, the Island is home to a variety of native...
Authors
Samuel H. Caldwell
Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web
Invasive species are drivers of ecological change with the potential to reshape the structure and function of terrestrial and aquatic ecosystems. The invasive flathead catfish (Pylodictis olivaris) is an opportunistic predator that has established a rapidly growing population in the Susquehanna River, Pennsylvania, USA, since they were first detected in 2002. Although the predatory...
Authors
Olivia C. Hodgson, Sydney Stark, Megan K. Schall, Geoffrey D. Smith, Kelly L. Smalling, Tyler Wagner
Potomac Tributary Summary: A summary of trends in tidal water quality and associated factors, 1985 - 2022 Potomac Tributary Summary: A summary of trends in tidal water quality and associated factors, 1985 - 2022
The Potomac Tributary Summary outlines change over time for a suite of monitored tidal water quality parameters and associated potential drivers of those trends for the period of 1985 to 2022, and provides a brief description of the current state of knowledge explaining these observed changes. Water quality parameters described include surface (above pycnocline) total nitrogen (TN)...
Authors
Breck Maura Sullivan, Kaylyn Gootman, Alex Gunnerson, Sarah Betts, Gabriel Duran, Cindy Johnson, Christopher A. Mason, Elgin Perry, Gopal Bhatt, Jennifer L. Keisman, James S. Webber, Jon Harcum, Michael Lane, Olivia Devereux, Qian Zhang, Rebecca Murphy, Renee Karrh, Thomas Butler, Zhaoying Wei
Tracking status and trends in seven key indicators of river and stream condition in the Chesapeake Bay watershed Tracking status and trends in seven key indicators of river and stream condition in the Chesapeake Bay watershed
Freshwater streams and rivers are recognized as vital habitats within the Chesapeake Bay watershed, which has been undergoing extensive restoration efforts for more than 30 years. Resource managers need to understand stream and river condition and how these conditions are changing over time to determine whether regional long-term restoration and conservation goals are being met. The...
Authors
Lindsey J. Boyle, Samuel H. Austin, Matthew J. Cashman, Zachary J. Clifton, John W. Clune, James E. Colgin, Kaitlyn E.M. Elliott, Rosemary M. Fanelli, Ellie P. Foss, Nathaniel P. Hitt, Elizabeth A. Hittle, Coral M. Howe, Emily H. Majcher, Kelly O. Maloney, Christopher A. Mason, Marina J. Metes, Douglas L. Moyer, Trevor P. Needham, Karli M. Rogers, Joshua J. Thompson, Guoxiang Yang, Tammy M. Zimmerman
Deformity, erosion, lesion, tumor, and parasite (DELT) anomalies in fish communities of the Chesapeake Bay watershed, USA: A regional assessment and potential landscape drivers Deformity, erosion, lesion, tumor, and parasite (DELT) anomalies in fish communities of the Chesapeake Bay watershed, USA: A regional assessment and potential landscape drivers
Fish diseases in freshwater ecosystems pose significant ecological and socioeconomic challenges, yet monitoring them in wild populations is complex due to interactions between pathogens, hosts, and environmental conditions. We examine the prevalence and watershed-scale landscape drivers of external deformity, erosion, lesion, tumor, and parasite (DELT) anomalies in 57 riverine fish...
Authors
Sara E. Breitmeyer, Paul McLaughlin, Vicki S. Blazer, Gregory B. Noe, Kelly L. Smalling, Timothy A. Wertz, Tyler Wagner