Increasingly, USGS scientists seek to share and collaborate while working on data and code. Furthermore, these scientists often require advanced computing resources. Jupyter Notebooks are one such tool for creating these workflows. The files are interactive, code “notebooks” which allow users to combine code and text in one document, enabling scientists to share the stories held within their data. Recently, USGS launched an instance of Pangeo—a community platform for Big Data geoscience—as a tool for internally hosting and executing these notebooks. Few examples exist on how to use Pangeo and no formal documentation exists for USGS scientists to use Pangeo. We will create and curate examples of using Jupyter Notebooks with Pangeo from across USGS, using an interdisciplinary team to test notions of interoperability and reusability.
Principal Investigator : Richard A Erickson
Co-Investigator : Edward A Bulliner
Cooperator/Partner : James E Diffendorfer, Michael N Fienen, Erica Mize, Christopher P Garrity, Kristi L Kline, Renee L Pieschke (CTR), Nathan J Roberts, Daniel J Nowacki, Sky Bristol, Jessica L Burnett
- Source: USGS Sciencebase (id: 5e95f26682ce172707f25368)
Jay Diffendorfer
Research Ecologist
Daniel Nowacki
Research Oceanographer
Christopher P Garrity
Supervisory Cartographer
Richard Erickson, PhD
Research Quantitative Ecologist
Jessica L Burnett, Ph.D.
Research Ecologist & Mendenhall Fellow
- Overview
Increasingly, USGS scientists seek to share and collaborate while working on data and code. Furthermore, these scientists often require advanced computing resources. Jupyter Notebooks are one such tool for creating these workflows. The files are interactive, code “notebooks” which allow users to combine code and text in one document, enabling scientists to share the stories held within their data. Recently, USGS launched an instance of Pangeo—a community platform for Big Data geoscience—as a tool for internally hosting and executing these notebooks. Few examples exist on how to use Pangeo and no formal documentation exists for USGS scientists to use Pangeo. We will create and curate examples of using Jupyter Notebooks with Pangeo from across USGS, using an interdisciplinary team to test notions of interoperability and reusability.
Principal Investigator : Richard A Erickson
Co-Investigator : Edward A Bulliner
Cooperator/Partner : James E Diffendorfer, Michael N Fienen, Erica Mize, Christopher P Garrity, Kristi L Kline, Renee L Pieschke (CTR), Nathan J Roberts, Daniel J Nowacki, Sky Bristol, Jessica L Burnett- Source: USGS Sciencebase (id: 5e95f26682ce172707f25368)
- Connect
Jay Diffendorfer
Research EcologistEmailPhoneDaniel Nowacki
Research OceanographerEmailPhoneChristopher P Garrity
Supervisory CartographerEmailPhoneRichard Erickson, PhD
Research Quantitative EcologistEmailPhoneJessica L Burnett, Ph.D.
Research Ecologist & Mendenhall FellowEmailPhone