Publications

We retrospectively compiled a database of 6,727 live, wild Agassiz's desert tortoises (Gopherus agassizii) and evaluated them for clinical signs of trauma to shell and limbs at 50 sites in the Mojave and Colorado (western Sonoran) deserts of California, USA, spanning the years 1977–2006. Our objectives were to 1) identify tortoises with severe trauma to shell, limbs, and gular horns...

Background Wildfire is an increasingly important driver of changes within sagebrush (Artemisia spp. L.) ecosystems of the western USA, often resulting in increased spread of exotic annual grasses, such as cheatgrass (Bromus tectorum L.), and subsequent losses of native vegetation and wildlife habitat. Fuel breaks— areas of land treated to reduce or redistribute fuel loads — are widely...

The San Francisco Bay supports thousands of breeding waterbirds annually and hosts large populations of American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), and Forster’s terns (Sterna forsteri). These three species have relied largely on former commercial salt ponds in south San Francisco Bay, which provide wetland foraging habitat and island nesting...

We assembled and annotated a chromosome-level reference genome for the Western Spadefoot, Spea hammondii (Anura, Scaphiopodidae) representing one of only three amphibians included in the California Conservation Genomics Project (CCGP). Spea hammondii is a vernal pool breeding anuran native to California and northwestern Baja California which has undergone both range contractions and...

Accelerating sea-level rise (SLR) is poised to reshape coastal environments over the coming decades, providing a challenge to land managers who need actionable information. Mangroves have an innate ability to keep pace with some SLR but may drown under the higher rates projected by the end of the century. Understanding local mangrove resilience to SLR requires understanding of historic...

Winter body condition is an important driver of survival, reproductive output, and overall population health in waterfowl. Diving duck species use distinct habitats, exploit unique resources, and can collectively provide an integrated index of winter habitat quality. The San Francisco Bay (SFB) is the largest estuary on the west coast of North America, serving as critical wintering...

Conservation translocations are an increasingly common and often necessary component of recovering species that have become extirpated from portions of their range. Understanding and ameliorating potential threats that reduce the likelihood of successful population establishment at recipient sites is a key component of successful translocation planning. We examined multiple potential...

Accurate mapping of post-fire surviving trees is important for tracking forest recovery and prioritizing land management decisions. Satellite-based remote sensing is an effective method to assess post-fire forest conditions. Traditionally, differenced satellite-derived burn severity indices are computed by differencing one year pre- and post-fire spectral reflectance values. Differenced...

The transition from small genetic to genome-scale datasets for studying biodiversity has revealed that genetic exchange through introgressive hybridization is a widespread phenomenon in nature. Despite this, a lack of high-quality reference genomes for most non-model species limits our understanding of the impact of this process for many taxonomic groups. This restricts the range of...

Integration of agroecosystems and other working landscapes with protected lands and waters is critical to the conservation of Earth's biodiversity. Rice agroecosystems support many species by providing aquatic habitat where natural wetlands have been altered or drained. In regions with long dry seasons, rice fields and associated irrigation canals provide essential habitat for wetland...

Background Understanding the relative contribution of climate and human factors to wildfires is critical for managing risk across California’s diverse ecosystems, in the United States (US).Aims We propose a model that distinguishes between proximate and ultimate drivers of fire regimes and apply it to a century of fire and climate data to assess regional variation in causal mechanisms...