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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42710

Experimental landscape reduction of wild rodents increases movements in the invasive brown treesnake (Boiga irregularis) Experimental landscape reduction of wild rodents increases movements in the invasive brown treesnake (Boiga irregularis)

Experimental studies evaluating the effects of food availability on the movement of free-ranging animals generally involve food supplementation rather than suppression. Both approaches can yield similar insights, but we were interested in the potential for using food suppression for the management and control of invasive predators, in particular, the brown treesnake (Boiga irregularis)...
Authors
Michelle Christy, Julie A. Savidge, Amy A. Yackel Adams, James E. Gragg, Gordon H. Rodda

Taxonomic and compositional differences of ground-dwelling arthropods in riparian habitats in Glen Canyon, Arizona, USA Taxonomic and compositional differences of ground-dwelling arthropods in riparian habitats in Glen Canyon, Arizona, USA

The disturbance history, plant species composition, productivity, and structural complexity of a site can exert bottom-up controls on arthropod diversity, abundance, and trophic structure. Regulation alters the hydrology and disturbance regimes of rivers and affects riparian habitats by changing plant quality parameters. Fifty years of regulation along the Colorado River downstream of...
Authors
Barbara Ralston, Neil S. Cobb, Sandra L. Brantley, Jacob Higgins, Charles B. Yackulic

Optimal control of an invasive species using a reaction-diffusion model and linear programming Optimal control of an invasive species using a reaction-diffusion model and linear programming

Managing an invasive species is particularly challenging as little is generally known about the species’ biological characteristics in its new habitat. In practice, removal of individuals often starts before the species is studied to provide the information that will later improve control. Therefore, the locations and the amount of control have to be determined in the face of great...
Authors
Mathieu Bonneau, Fred A. Johnson, Brian J. Smith, Christina M. Romagosa, Julien Martin, Frank J. Mazzotti

Biogeography: An interweave of climate, fire, and humans Biogeography: An interweave of climate, fire, and humans

Longleaf pine (Pinus palustris) is an icon of the southeastern United States and has been considered a foundation species in forests, woodlands, and savannas of the region (Schwarz 1907; Platt 1999). Longleaf pine is an avatar for the extensive pine-dominated, fire-dependent ecosystems (Figure 2.1) that provide habitats for thousands of species and have largely vanished from the...
Authors
Michael C. Stambaugh, J. Morgan Varner, Stephen T. Jackson

Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage

This is the first comprehensive region wide, spatially explicit epidemiologic analysis of surveillance data of the aquatic viral pathogen infectious hematopoietic necrosis virus (IHNV) infecting native salmonid fish. The pathogen has been documented in the freshwater ecosystem of the Pacific Northwest of North America since the 1950s, and the current report describes the disease ecology...
Authors
Rachel Breyta, Ilana L. Brito, Paige Ferguson, Gael Kurath, Kerry A. Naish, Maureen K. Purcell, Andrew R. Wargo, Shannon L. LaDeau

Food-web dynamics and isotopic niches in deep-sea communities residing in a submarine canyon and on the adjacent open slopes Food-web dynamics and isotopic niches in deep-sea communities residing in a submarine canyon and on the adjacent open slopes

Examination of food webs and trophic niches provide insights into organisms' functional ecology, yet few studies have examined trophodynamics within submarine canyons, where the interaction of canyon morphology and oceanography influences habitat provision and food deposition. Using stable isotope analysis and Bayesian ellipses, we documented deep-sea food-web structure and trophic...
Authors
Amanda W.J. Demopoulos, Jennifer McClain-Counts, Steve W. Ross, Sandra Brooke, Furu Mienis

Skagit River coho salmon life history model—Users’ guide Skagit River coho salmon life history model—Users’ guide

Natural resource management is conducted in the context of multiple anthropogenic stressors and is further challenged owing to changing climate. Experiments to determine the effects of climate change on complex ecological systems are nearly impossible. However, using a simulation model to synthesize current understanding of key ecological processes through the life cycle of a fish...
Authors
Andrea Woodward, Grant Kirby, Scott Morris

California sea otter (Enhydra lutris nereis) census results, Spring 2017 California sea otter (Enhydra lutris nereis) census results, Spring 2017

The 2017 census of southern sea otters (Enhydra lutris nereis) was conducted between late April and early July along the mainland coast of central California and in April at San Nicolas Island in southern California. The 3-year average of combined counts from the mainland range and San Nicolas Island was 3,186, down by 86 sea otters from the previous year. This is the second year that...
Authors
M. Tim Tinker, Brian B. Hatfield

Alligator mississippiensis (American Alligator): Novel non-native prey Alligator mississippiensis (American Alligator): Novel non-native prey

American Alligators are opportunistic predators and their food habits have been well studied (Elsey et al. 1992. Proc. Annu. Conf. Southeast. Assoc. Fish Wildl. Agencies 46:57–66, and references therein and below). Composition of A. mississippiensis diet often varies due to regional limitation in prey availability (Neill 1971. The Last of the Ruling Reptiles. Alligators, Crocodiles, and...
Authors
Ruth M. Elsey, Eric Ledet, Jacoby Carter

Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary

Executive Summary We surveyed for Least Bell’s Vireos (LBVI) (Vireo bellii pusillus) and Southwestern Willow Flycatchers (SWFL) (Empidonax traillii extimus) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2016. Surveys were done from March 30 to July 11 (LBVI) and from May 18 to July 30 (SWFL)...
Authors
Lisa D. Allen, Scarlett L. Howell, Barbara E. Kus

Importance of scale, land cover, and weather on the abundance of bird species in a managed forest Importance of scale, land cover, and weather on the abundance of bird species in a managed forest

Climate change and habitat loss are projected to be the two greatest drivers of biodiversity loss over the coming century. While public lands have the potential to increase regional resilience of bird populations to these threats, long-term data are necessary to document species responses to changes in climate and habitat to better understand population vulnerabilities. We used...
Authors
Alexis R. Grinde, Gerald J. Hiemi, Brian R. Sturtevant, Hannah Panci, Wayne E. Thogmartin, Peter Wolter

Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama

Genetic diversity and haplotype composition of the West Indian manatee (Trichechus manatus) population from the San San Pond Sak wetland in Bocas del Toro, Panama was studied using a segment of mitochondrial DNA (D’loop). No genetic information has been published to date for Panamanian populations. Due to the secretive behavior and small population size of the species in the area, DNA...
Authors
Edgardo Diaz-Ferguson, Margaret Hunter, Hector M. Guzman
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