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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42878

Social-ecological outcomes in recreational fisheries: The interaction of lakeshore development and stocking Social-ecological outcomes in recreational fisheries: The interaction of lakeshore development and stocking

Many ecosystems continue to experience rapid transformations due to processes like land use change and resource extraction. A systems approach to maintaining natural resources focuses on how interactions and feedbacks among components of complex social‐ecological systems generate social and ecological outcomes. In recreational fisheries, residential shoreline development and fish...
Authors
Jacob P. Ziegler, Elizabeth J. Golebie, Stuart E. Jones, Brian Weidel, Christopher T. Solomon

Low thinning and crown thinning of two severities as restoration tools at Redwood National Park Low thinning and crown thinning of two severities as restoration tools at Redwood National Park

Interest in the restoration of second-growth forests has continued to increase in the redwood region, which has further increased the importance of evaluating restoration-based silvicultural strategies. This study assessed the short-term effectiveness of four silvicultural treatments (two silvicultural thinning methods, low thinning and crown thinning, and two basal area retentions, 80...
Authors
Jason R Teraoka, Phillip J. van Mantgem, Christopher R. Keyes

Improved vertical streambed flux estimation using multiple diurnal temperature methods in series Improved vertical streambed flux estimation using multiple diurnal temperature methods in series

Analytical solutions that use diurnal temperature signals to estimate vertical fluxes between groundwater and surface water based on either amplitude ratios (Ar) or phase shifts (Δϕ) produce results that rarely agree. Analytical solutions that simultaneously utilize Ar and Δϕ within a single solution have more recently been derived, decreasing uncertainty in flux estimates in some...
Authors
Dylan J. Irvine, Martin A. Briggs, Ian Cartwright, Courtney R. Scruggs, Laura K. Lautz

Replication and shedding kinetics of infectious hematopoietic necrosis virus in juvenile rainbow trout Replication and shedding kinetics of infectious hematopoietic necrosis virus in juvenile rainbow trout

Viral replication and shedding are key components of transmission and fitness, the kinetics of which are heavily dependent on virus, host, and environmental factors. To date, no studies have quantified the shedding kinetics of infectious hematopoietic necrosis virus (IHNV) in rainbow trout (Oncorhynchus mykiss), or how they are associated with replication, making it difficult to...
Authors
Andrew R. Wargo, Robert J. Scott, Benjamin Kerr, Gael Kurath

Hierarchical stochastic modeling of large river ecosystems and fish growth across spatio-temporal scales and climate models: the Missouri River endangered pallid sturgeon example Hierarchical stochastic modeling of large river ecosystems and fish growth across spatio-temporal scales and climate models: the Missouri River endangered pallid sturgeon example

We present a hierarchical series of spatially decreasing and temporally increasing models to evaluate the uncertainty in the atmosphere – ocean global climate model (AOGCM) and the regional climate model (RCM) relative to the uncertainty in the somatic growth of the endangered pallid sturgeon (Scaphirhynchus albus). For effects on fish populations of riverine ecosystems, cli- mate output...
Authors
Mark L. Wildhaber, Christopher K. Wikle, Edward H. Moran, Christopher J. Anderson, Kristie J. Franz, Rima Dey

A fully-stochasticized, age-structured population model for population viability analysis of fish: Lower Missouri River endangered pallid sturgeon example A fully-stochasticized, age-structured population model for population viability analysis of fish: Lower Missouri River endangered pallid sturgeon example

We develop a fully-stochasticized, age-structured population model suitable for population viability analysis (PVA) of fish and demonstrate its use with the endangered pallid sturgeon (Scaphirhynchus albus) of the Lower Missouri River as an example. The model incorporates three levels of variance: parameter variance (uncertainty about the value of a parameter itself) applied at the...
Authors
Mark L. Wildhaber, Janice L. Albers, Nicholas S. Green, Edward H. Moran

Hydrologic modeling in a marsh-mangrove ecotone: Predicting wetland surface water and salinity response to restoration in the Ten Thousand Islands region of Florida, USA Hydrologic modeling in a marsh-mangrove ecotone: Predicting wetland surface water and salinity response to restoration in the Ten Thousand Islands region of Florida, USA

At the fringe of Everglades National Park in southwest Florida, United States, the Ten Thousand Islands National Wildlife Refuge (TTINWR) habitat has been heavily affected by the disruption of natural freshwater flow across the Tamiami Trail (U.S. Highway 41). As the Comprehensive Everglades Restoration Plan (CERP) proposes to restore the natural sheet flow from the Picayune Strand...
Authors
B.D. Michot, E.A. Meselhe, Ken W. Krauss, Surendra Shrestha, Andrew S. From, Eduardo Patino

Declining survival of black brant from subarctic and arctic breeding areas Declining survival of black brant from subarctic and arctic breeding areas

Since the mid 1990s, the number of black brant (Branta bernicla nigricans; brant) nests on the Yukon‐Kuskokwim Delta (YKD), Alaska, USA, the historically predominant breeding area of brant, has declined steadily. This has caused researchers and managers to question if arctic breeding populations can compensate for the reduction in brant nests on the YKD. An important component of the...
Authors
Alan G. Leach, David H. Ward, James S. Sedinger, Mark S. Lindberg, W. Sean Boyd, Jerry W. Hupp, Robert J. Ritchie

Thiamine and lipid utilization in fasting Chinook salmon Thiamine and lipid utilization in fasting Chinook salmon

A laboratory study was conducted to estimate utilization rates of thiamine (vitamin B1) and lipid in whole fish, muscle, and liver tissues of fasting Chinook salmon (Oncorhynchus tshawytscha). The experiment was conducted with Chinook salmon held at 5ºC over a period of 150 days to simulate fasting during migration or overwintering. Chinook salmon body length and wet weight did not...
Authors
Dale C. Honeyfield, A. K. Peters, Michael L. Jones
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