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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42710

Amphibian richness, rarity, threats, and conservation prospects across the U.S. National Park System Amphibian richness, rarity, threats, and conservation prospects across the U.S. National Park System

We assessed amphibian diversity, rarity, and threats across the National Park System (U.S.A.), which covers 3.5% of the country and 12% of federal lands. At least 230 of 354 (65%) amphibian species documented in the country occur on National Park Service lands. Of species in parks, 17% are at-risk globally and 20% are uncategorized, reflecting still-widespread data deficiencies. National...
Authors
Benjamin J. LaFrance, Andrew M. Ray, Michael T. Tercek, Robert N. Fisher, Blake R. Hossack

A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images A transferable approach for quantifying benthic fish sizes and densities in annotated underwater images

1. Benthic fishes are a common target of scientific monitoring but are difficult to quantify because of their close association to bottom habitats that are hard to access. Advances in image-acquisition technologies, machine vision, and deep learning have made capturing and quantifying fishes with cameras increasingly feasible. We present a method and open-source software called...
Authors
Peter C. Esselman, Shadi Moradi, Joseph K. Geisz, Christopher Roussi

Potentially toxic elements in wild Agassiz’s desert tortoises: Tissue concentrations and association with disease Potentially toxic elements in wild Agassiz’s desert tortoises: Tissue concentrations and association with disease

Background: Desert tortoise (Gopherus agassizii) populations have continued to decline due to infectious and other diseases, predation, and habitat alteration. The potential contribution of minerals and heavy metals to tortoise health and susceptibility to disease remains uncertain. Objective: The objective of this study was to evaluate the results of elemental analysis of trace minerals...
Authors
Kristin H. Berry, Mary M. Christopher, Elliiott Jacobson

Themed social networking groups as effective sources of data: A country-wide survey on invasive bigheaded carp (Hipophthalmichthys molitrix and H. nobilis) detection and distribution Themed social networking groups as effective sources of data: A country-wide survey on invasive bigheaded carp (Hipophthalmichthys molitrix and H. nobilis) detection and distribution

Citizen science commonly uses social networking platforms because they provide the easiest way to contact people. Social networking platforms can also be especially effective in that they gather people by interest and region. By sharing questionnaires and collecting photographs in angling-themed Facebook groups, we assessed the applicability of social networking groups in citizen science...
Authors
Zoltán Vitál, Duane Chapman, Béla Halasi-Kovács, Attila Mozsár

Surveying waterfowl broods in wetlands using aerial drones Surveying waterfowl broods in wetlands using aerial drones

Effective waterfowl management relies on the collection of relevant demographic data to inform land management decisions; however, some types of data are difficult to obtain. For waterfowl, brood surveys are difficult to conduct because wetland habitats often obscure ducklings from being visually assessed. Here, we used Unoccupied Aerial Systems (UAS) to assess what wetland habitat...
Authors
Desmond Alexander Mackell, Michael L. Casazza, Cory T. Overton, Kevin Buffington, Chase M. Freeman, Josh T. Ackerman, Karen M. Thorne

Evaluation of a carbon dioxide fish barrier through numerical modelling Evaluation of a carbon dioxide fish barrier through numerical modelling

The Chicago Area Waterway System (CAWS) is a potential route for the migration of aquatic invasive species from the Mississippi River Basin into the Great Lakes. Electric dispersal barriers were installed in the Chicago Sanitary Ship Canal, within CAWS, to prevent invasive fish from reaching the Great Lakes. Despite the high efficiency of these barriers, occasional maintenance events...
Authors
Marcela Politano, Aaron R. Cupp, David Smith, Avery Schemmel, P. Ryan Jackson, Jeff Zuercher

Bird habitat value and management priorities of the California Winter Rice Habitat Incentive Program Bird habitat value and management priorities of the California Winter Rice Habitat Incentive Program

Flooding rice (Oryza sativa) agricultural fields during winter to facilitate rice straw decomposition has mitigated the loss of some of the natural wetlands in California’s Central Valley. We conducted bird surveys in 253 rice checks (2,158 ha) within 177 rice fields in the Sacramento Valley during the fall and winter of 2021-2022 and 2022-2023 to evaluate factors influencing bird use of...
Authors
Sarah H. Peterson, Josh T. Ackerman, Carley R. Schacter, C. Alex Hartman, Mark P. Herzog

Advancing at-risk species recovery planning in an era of rapid ecological change with a transparent, flexible, and expert-engaged approach Advancing at-risk species recovery planning in an era of rapid ecological change with a transparent, flexible, and expert-engaged approach

In the face of unprecedented ecological changes, the conservation community needs strategies to recover species at risk of extinction. On the Island of Maui, we collaborated with species experts and managers to assist with climate-resilient recovery planning for 36 at-risk native plant species by identifying priority areas for the management of recovery populations. To do this, we...
Authors
Lucas Fortini, Christina Leopold, Fred Amidon, Devin Leopold, Scott Fretz, James D. Jacobi, Loyal Mehrhoff, Jonathan Price, Fern Duval, Matthew Kier, Hank Oppenheimer, Lauren Weisenburger, Robert Sutter

Determination of antimycin–a in a liquid formulation by high performance liquid chromatography–mass spectrometry Determination of antimycin–a in a liquid formulation by high performance liquid chromatography–mass spectrometry

Pesticide formulations containing the active ingredient antimycin–a (ANT–A) have been used by fisheries and aquaculture managers for several decades to remove nuisance fish species. Analytical methods for measuring ANT–A during pesticide treatments have been done using high performance liquid chromatography (HPLC) paired with multiple detection methods (for example, electrochemical...
Authors
Gavin N. Saari, J. Nolan Steiner, Bryan Lada, Nadia Carmosini

Pathology of lesions in corals from the US Virgin Islands after emergence of stony coral tissue loss disease Pathology of lesions in corals from the US Virgin Islands after emergence of stony coral tissue loss disease

Stony coral tissue loss disease (SCTLD) was first documented in Florida in 2014 and has since spread through the Caribbean causing unprecedented mortality in more than 20 species of corals. The cause of SCTLD is unknown, but bacteria are suspected based on regression of gross lesions in some corals treated with antibiotics. Limited pathology studies on SCTLD exist, but it is likely that...
Authors
Thierry M. Work, Jeff Miller, Thomas Kelley, Aine C. Hawthorn, Tina Weatherby, Caroline Rogers

Ticks without borders: Microbiome of immature neotropical tick species parasitizing migratory songbirds along northern Gulf of Mexico Ticks without borders: Microbiome of immature neotropical tick species parasitizing migratory songbirds along northern Gulf of Mexico

Introduction: The long-distance, seasonal migrations of birds make them an effective ecological bridge for the movement of ticks. The introduction of exotic tick species to new geographical regions can cause the emergence of novel tick-borne pathogens. This study examined the prevalence of exotic tick species parasitizing migratory songbirds at stopover sites along the northern Gulf of...
Authors
Shahid Karim, Theodore J. Zenzal, Lorenza Beati, Raima Sen, Abdulsalam Adegoke, Deepak Kumar, Latoyia P. Downs, Mario Keko, Ashly Nussbaum, Daniel J. Becker, Frank R. Moore

Toxicity of crude oil-derived polar unresolved complex mixtures to Pacific herring embryos: Insights beyond polycyclic aromatic hydrocarbons Toxicity of crude oil-derived polar unresolved complex mixtures to Pacific herring embryos: Insights beyond polycyclic aromatic hydrocarbons

Crude oil toxicity to early life stage fish is commonly attributed to polycyclic aromatic hydrocarbons (PAHs). However, it remains unclear how the polar unresolved complex mixture (UCM), which constitutes the bulk of the water-soluble fraction of crude oil, contributes to crude oil toxicity. Additionally, the role of photomodification-induced toxicity in relation to the polar UCM is not...
Authors
Maxwell L. Harsha, Yanila Salas-Ortiz, Alysha D. Cypher, Ed Osborn, Eduardo Turcios Valle, Jacob L. Gregg, Paul Hershberger, Yuri Kurerov, Sarah King, Aleksandar I. Goranov, Patrick G. Hatcher, Anastasia Konefal, T. Erin Cox, Justin Blaine Greer, James P. Meador, Matthew A. Tarr, Patrick L. Tomco, David C. Podgorski
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