Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42871
Importance of riparian forest corridors for the ocelot in agricultural landscapes Importance of riparian forest corridors for the ocelot in agricultural landscapes
Worldwide, private lands have attracted increased attention from conservationists, not only because most of the globe is privately owned, but also because private lands can be an asset to the protected area conservation strategy. In Brazil, the riverine Areas of Permanent Protection (APPs) is a key instrument of the Forest Code to protect native vegetation on private lands. Although APPs...
Authors
Roberta Paolino, J. Andrew Royle, Natalia Versiani, Thiago F. Rodrigues, Nielson Pasqualotto, Victor Krepschi, Adriano Chiarello
On the reliability of N‐mixture models for count data On the reliability of N‐mixture models for count data
N‐mixture models describe count data replicated in time and across sites in terms of abundance N and detectability p. They are popular because they allow inference about N while controlling for factors that influence p without the need for marking animals. Using a capture–recapture perspective, we show that the loss of information that results from not marking animals is critical, making...
Authors
Richard J. Barker, Matthew J. Schofield, William A. Link, John R. Sauer
Juvenile salmonid monitoring following removal of Condit Dam in the White Salmon River Watershed, Washington, 2017 Juvenile salmonid monitoring following removal of Condit Dam in the White Salmon River Watershed, Washington, 2017
Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011, and removed completely in 2012, providing anadromous salmonids with the opportunity to recolonize habitat blocked for nearly 100 years. Prior to dam removal, a multi-agency workgroup concluded that the preferred salmonid restoration alternative was to allow natural recolonization. Monitoring...
Authors
Ian G. Jezorek, Jill M. Hardiman
“Asian carp” is societally and scientifically problematic. Let's replace it “Asian carp” is societally and scientifically problematic. Let's replace it
Bighead Carp Hypophthalmichthys nobilis, Black Carp Mylopharyngodon piceus, Grass Carp Ctenopharyngodon idella, and Silver Carp H. molitrix are considered invasive species in North America and Europe. In North America, they are typically referred to collectively as “Asian carp”, a reference to their native range. The category “Asian carp” fails to acknowledge the cultural value and the...
Authors
Patrick Kocovsky, Duane Chapman, Song S. Qian
Variation in inbreeding rates across the range of Northern Spotted Owls (Strix occidentalis caurina): Insights from over 30 years of monitoring data Variation in inbreeding rates across the range of Northern Spotted Owls (Strix occidentalis caurina): Insights from over 30 years of monitoring data
Inbreeding has been difficult to quantify in wild populations because of incomplete parentage information. We applied and extended a recently developed framework for addressing this problem to infer inbreeding rates in Northern Spotted Owls (Strix occidentalis caurina) across the Pacific Northwest, USA. Using pedigrees from 14,187 Northern Spotted Owls, we inferred inbreeding rates for...
Authors
Mark P. Miller, Susan M. Haig, Eric D. Forsman, Robert G. Anthony, Lowell Diller, Katie M. Dugger, Alan B. Franklin, Tracy L. Fleming, Scott Gremel, Damon B. Lesmeister, Mark Higley, Dale R. Herter, Stan G Sovern
Modeling framework to estimate spawning and hatching locations of pelagically-spawned eggs Modeling framework to estimate spawning and hatching locations of pelagically-spawned eggs
Identifying spawning and hatching locations is vital to controlling invasive fish and conserving imperiled fish, which can be difficult for pelagically-spawning species with semi-buoyant eggs. In freshwater systems, this reproductive strategy is common among cyprinid species, such as Chinese carp species currently threatening the Great Lakes. Following the confirmation that one of these...
Authors
Holly S. Embke, Patrick Kocovsky, Tatiana Garcia, Christine M. Mayer, Song S. Qian
Modeling the distributions of tegu lizards in native and potential invasive ranges Modeling the distributions of tegu lizards in native and potential invasive ranges
Invasive reptilian predators can have substantial impacts on native species and ecosystems. Tegu lizards are widely distributed in South America east of the Andes, and are popular in the international live animal trade. Two species are established in Florida (U.S.A.) - Salvator merianae (Argentine black and white tegu) and Tupinambis teguixin sensu lato (gold tegu) – and a third has been...
Authors
Catherine S. Jarnevich, Mark Hayes, Lee A. Fitzgerald, Amy Yackel, Bryan Falk, Michelle Collier, Lea Bonewell, Page Klug, Sergio Naretto, Robert Reed
Defining the risk landscape in the context of pathogen pollution: Toxoplasma gondii in sea otters along the Pacific Rim Defining the risk landscape in the context of pathogen pollution: Toxoplasma gondii in sea otters along the Pacific Rim
Pathogens entering the marine environment as pollutants exhibit a spatial signature driven by their transport mechanisms. The sea otter (Enhydra lutris), a marine animal which lives much of its life within sight of land, presents a unique opportunity to understand land–sea pathogen transmission. Using a dataset on Toxoplasma gondii prevalence across sea otter range from Alaska to...
Authors
Tristan L. Burgess, M. Tim Tinker, Melissa A. Miller, James L. Bodkin, Michael J. Murray, Justin A. Saarinen, Linda M. Nichol, Shawn E. Larson, Patricia A. Conrad, Christine K. Johnson
Real-time nowcasting of microbiological water quality at recreational beaches: A wavelet and artificial neural network-based hybrid modeling approach Real-time nowcasting of microbiological water quality at recreational beaches: A wavelet and artificial neural network-based hybrid modeling approach
The number of beach closings caused by bacterial contamination has continued to rise in recent years, putting beachgoers at risk of exposure to contaminated water. Current approaches predict levels of indicator bacteria using regression models containing a number of explanatory variables. Data-based modeling approaches can supplement routine monitoring data and provide highly accurate...
Authors
Juan Zhang, Han Qiu, Xiaoyu Li, Jie Niu, Meredith B. Nevers, Xiaonong Hu, Mantha S. Phanikumar
On the robustness of N‐mixture models On the robustness of N‐mixture models
N‐mixture models provide an appealing alternative to mark–recapture models, in that they allow for estimation of detection probability and population size from count data, without requiring that individual animals be identified. There is, however, a cost to using the N‐mixture models: inference is very sensitive to the model's assumptions. We consider the effects of three violations of...
Authors
William A. Link, Matthew R. Schofield, Richard J. Barker, John R. Sauer
Inferring presence of the western toad (Anaxyrus boreas) species complex using environmental DNA Inferring presence of the western toad (Anaxyrus boreas) species complex using environmental DNA
Western toads (species complex comprised of Anaxyrus boreas, A. canorus, A. exsul, and A. nelsoni) are widely distributed in the western United States but are declining, particularly in the southeastern extent of their range. The subspecies A. b. boreas is listed as a Species of Greatest Conservation Need in New Mexico, Colorado, Utah, and Wyoming. Reliable and sensitive methods for...
Authors
Thomas W. Franklin, Joseph C. Dysthe, Michael Golden, Kevin S. McKelvey, Blake R. Hossack, Kellie J. Carim, Cynthia Tait, Michael K. Young, Michael K. Schwartz
Duck nest depredation, predator behavior, and female response using video Duck nest depredation, predator behavior, and female response using video
Depredation plays an important role in determining duck nest success and predator and female duck behavior during nest depredation can influence nest fate. We examined depredation of mallard (Anas platyrhynchos) and gadwall (A. strepera) nests in Suisun Marsh, California, USA, in 2015–2016 with continuous infrared video monitoring to identify nest predators and characterize predator and...
Authors
Rebecca Croston, Joshua T. Ackerman, Mark P. Herzog, Jeffrey D. Kohl, C. Alex Hartman, Sarah H. Peterson, Cory T. Overton, Cliff L. Feldheim, Michael L. Casazza