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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Host feeding ecology and trophic position significantly influence isotopic discrimination between a generalist ectoparasite and its hosts: Implications for parasite-host trophic studies Host feeding ecology and trophic position significantly influence isotopic discrimination between a generalist ectoparasite and its hosts: Implications for parasite-host trophic studies

Despite being one of the most prevalent forms of consumerism in ecological communities, parasitism has largely been excluded from food-web models. Stable isotope analysis of consumers and their diets has been widely used in the study of food webs for decades. However, the amount of information regarding parasite stable isotope ecology is limited, restricting the ability of ecologists to...
Authors
William G. Jenkins, Amanda W.J. Demopoulos, Paul C. Sikkel

A method for determining avian influenza virus hemagglutinin and neuraminidase subtype association A method for determining avian influenza virus hemagglutinin and neuraminidase subtype association

Methods for grouping specific avian influenza virus (AIV) hemagglutinin (HA) and neuraminidase (NA) subtype reverse-transcription polymerase chain reaction (RT-PCR) products into HA:NA subtypes when egg incubation is technically not feasible were evaluated. These approaches were adopted for use as post hoc methods after melt curve analysis. The methods are based on ratios obtained from...
Authors
Christopher Ottinger, Deborah D. Iwanowicz, Luke R. Iwanowicz, Cynthia R. Adams, Lakyn R. Sanders, Christine L. Densmore

Abundance and productivity of marbled murrelets (Brachyramphus marmoratus) off central California during the 2017 breeding season Abundance and productivity of marbled murrelets (Brachyramphus marmoratus) off central California during the 2017 breeding season

Marbled murrelets (Brachyramphus marmoratus) have been listed as “Endangered” by the State of California and “Threatened” by the U.S. Fish and Wildlife Service since 1992 in California, Oregon, and Washington. Information regarding marbled murrelet abundance, distribution, population trends, and habitat associations is critical for risk assessment, effective management and evaluation of
Authors
Jonathan J. Felis, Josh Adams, Emily C. Kelsey

Temporal evaluation of estrogenic endocrine disruption markers in smallmouth bass (Micropterus dolomieu) reveals seasonal variability in intersex Temporal evaluation of estrogenic endocrine disruption markers in smallmouth bass (Micropterus dolomieu) reveals seasonal variability in intersex

A reconnaissance project completed in 2009 identified intersex and elevated plasma vitellogenin in male smallmouth bass inhabiting the Missisquoi River, VT. In an attempt to identify the presence and seasonality of putative endocrine disrupting chemicals or other factors associated with these observations, a comprehensive reevaluation was conducted between September 2012 and June 2014...
Authors
Luke R. Iwanowicz, A.E. Pinkney, C.P. Guy, A.M. Major, K. Munney, Vicki S. Blazer, David Alvarez, Heather L. Walsh, Adam J. Sperry, Lakyn R. Sanders, D. R. Smith

Accounting for location uncertainty in azimuthaltelemetry data improves ecological inference Accounting for location uncertainty in azimuthaltelemetry data improves ecological inference

Background Characterizing animal space use is critical for understanding ecological relationships. Animal telemetry technology has revolutionized the fields of ecology and conservation biology by providing high quality spatial data on animal movement. Radio-telemetry with very high frequency (VHF) radio signals continues to be a useful technology because of its low cost, miniaturization...
Authors
Mevin Hooten, Brian D. Gerber, Christopher P. Peck, Mindy B. Rice, Anthony D. Apa, James H. Gammonley, Amy J. Davis

Lactation and resource limitation affect stress responses, thyroid hormones, immune function, and antioxidant capacity of sea otters (Enhydra lutris) Lactation and resource limitation affect stress responses, thyroid hormones, immune function, and antioxidant capacity of sea otters (Enhydra lutris)

Lactation is the most energetically demanding stage of reproduction in female mammals. Increased energetic allocation toward current reproduction may result in fitness costs, although the mechanisms underlying these trade‐offs are not well understood. Trade‐offs during lactation may include reduced energetic allocation to cellular maintenance, immune response, and survival and may be...
Authors
Sarah M. Chinn, Daniel Monson, M. Tim Tinker, Michelle M. Staedler, Daniel E. Crocker

Landscape pivot points and responses to water balance in national parks of the southwest US Landscape pivot points and responses to water balance in national parks of the southwest US

A recent drying trend that is expected to continue in the southwestern US underscores the need for site‐specific and near real‐time understanding of vegetation vulnerability so that land management actions can be implemented at the right time and place. We related the annual integrated normalized difference vegetation index (iNDVI), a proxy for vegetation production, to water balance...
Authors
David P. Thoma, Seth M. Munson, Dana L. Witwicki

Evaluation of sockeye salmon after passage through an innovative upstream fish-passage system at Cle Elum Dam, Washington, 2017 Evaluation of sockeye salmon after passage through an innovative upstream fish-passage system at Cle Elum Dam, Washington, 2017

Executive Summary The Bureau of Reclamation (Reclamation) and the Washington State Department of Ecology (Ecology), working with the Yakima River Basin Water Enhancement Project Workgroup (composed of representatives of the Yakama Nation; Federal, State, county, and city governments; environmental organizations; and irrigation districts), developed the Yakima Basin Integrated Plan...
Authors
Tobias J. Kock, Scott D. Evans, Amy C. Hansen, Russell W. Perry, Hal C. Hansel, Philip V. Haner, Ryan G. Tomka

Monitoring breeding and migration of neotropical migratory birds at Naval Base Coronado, Remote Training Site, Warner Springs, San Diego County, California, 5-year summary, 2013–17 Monitoring breeding and migration of neotropical migratory birds at Naval Base Coronado, Remote Training Site, Warner Springs, San Diego County, California, 5-year summary, 2013–17

We operated a bird banding station on the Naval Base Coronado, Remote Training Site, Warner Springs (RTSWS), in northeastern San Diego County, California, during the bird breeding season (spring/summer) from 2013 to 2017 and during migration (fall) from 2013 to 2016. The station was established in spring 2013 as part of the Monitoring Avian Productivity and Survivorship (MAPS) program...
Authors
Suellen Lynn, Katie A. Hall, Melanie C. Madden, Barbara E. Kus

Survival, travel time, and utilization of Yolo Bypass, California, by outmigrating acoustic-tagged late-fall Chinook salmon Survival, travel time, and utilization of Yolo Bypass, California, by outmigrating acoustic-tagged late-fall Chinook salmon

Juvenile Chinook salmon (Oncorhynchus tshawytscha) migrating through California's Sacramento-San Joaquin River Delta toward the Pacific Ocean face numerous challenges to their survival. The Yolo Bypass is a broad floodplain of the Sacramento River that floods in about 70 percent of years in response to large, uncontrolled runoff events. As one of the routes juvenile salmon may utilize...
Authors
Adam C. Pope, Russell W. Perry, Dalton J. Hance, Hal C. Hansel

U.S. Geological Survey response to white-nose syndrome in bats U.S. Geological Survey response to white-nose syndrome in bats

Overview Since its discovery in 2007, the fungal disease known as white-nose syndrome (WNS) has killed more than six million bats. Ten of 47 bat species have been affected by WNS across 32 States and 5 Canadian Provinces. The cold-growing fungus (Pseudogymnoascus destructans) that causes WNS infects skin covering the muzzle, ears, and wings of hibernating bats. The fungus erodes deep...
Authors
M. Camille Hopkins, Suzanna C. Soileau

The influence of different deep-sea coral habitats on sediment macrofaunal community structure and function The influence of different deep-sea coral habitats on sediment macrofaunal community structure and function

Deep-sea corals can create a highly complex, three-dimensional structure that facilitates sediment accumulation and influences adjacent sediment environments through altered hydrodynamic regimes. Infaunal communities adjacent to different coral types, including reef-building scleractinian corals and individual colonies of octocorals, are known to exhibit higher macrofaunal densities and...
Authors
Jill R. Bourque, Amanda W.J. Demopoulos
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