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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42710

Spatial and temporal surveys of salmon environmental DNA (eDNA) in a Seattle urban creek Spatial and temporal surveys of salmon environmental DNA (eDNA) in a Seattle urban creek

Seattle Public Utilities (SPU) has a history of conducting traditional fish surveys in urban streams of Seattle, Washington. Limited staff resources have reduced SPU's capacity to monitor fish, and environmental DNA (eDNA) was recognized as an alternative survey method that could potentially improve the efficiency and capacity of SPU-sponsored fish surveys. We performed spatiotemporal...
Authors
Carl O. Ostberg, Chapin Pier, Dorothy M. Chase, Russell Perry

Postfire sediment mobilization and its downstream implications across California, 1984 – 2021 Postfire sediment mobilization and its downstream implications across California, 1984 – 2021

Fire facilitates erosion through changes in vegetation and soil, with major postfire erosion commonly occurring even with moderate rainfall. As climate warms, the western United States (U.S.) is experiencing an intensifying fire regime and increasing frequency of extreme rain. We evaluated whether these hydroclimatic changes are evident in patterns of postfire erosion by modeling...
Authors
Helen Willemien Dow, Amy E. East, Joel B. Sankey, Jonathan A. Warrick, Jaime Kostelnik, Donald N. Lindsay, Jason W. Kean

Structured science syntheses to inform decision making on Federal public lands Structured science syntheses to inform decision making on Federal public lands

The U.S. Geological Survey, Bureau of Land Management, and U.S. Fish and Wildlife Service partnered to develop a new type of science product: the structured science synthesis. Structured science syntheses are peer-reviewed reports that synthesize science information about a priority resource management issue on public lands. Structured science syntheses are developed explicitly to...
Authors
Emma I. Dietrich, Sarah K. Carter, Tait K. Rutherford, Megan A. Gilbert, Travis S. Haby, Aaron N. Johnston, Samuel E. Jordan, Nathan J. Kleist, Richard J. Lehrter, Elroy H. Masters, Claudia Mengelt, Alexandra L. Stoneburner, Elisabeth C. Teige, John C. Tull, Sarah E. Whipple, David J. A. Wood

Occupancy dynamics of the California Gnatcatcher in southern California Occupancy dynamics of the California Gnatcatcher in southern California

Executive Summary The Coastal California Gnatcatcher (Polioptila californica californica: “gnatcatcher”) is a resident species restricted to coastal sage scrub habitat in southern California. Listed as federally threatened, the gnatcatcher is subject to multiple threats, including habitat loss, fragmentation, and degradation, particularly in association with the increasing frequency of...
Authors
Barbara E. Kus, Alexandra Houston, Kristine L. Preston

Hyperspectral imaging predicts differences in carbon and nitrogen status among representative biocrust functional groups of the Colorado Plateau Hyperspectral imaging predicts differences in carbon and nitrogen status among representative biocrust functional groups of the Colorado Plateau

Biological soil crusts (biocrusts) are widespread soil photosynthetic communities covering about 12% of Earth's land surface and play crucial roles in terrestrial carbon (C) and nitrogen (N) cycles, yet scalable quantifications of biocrusts and their biogeochemical contributions are notably lacking. While remote sensing has enormous potential to assess, scale, and contextualize biocrusts...
Authors
Dong Yan, Sasha C. Reed, William A. Rutherford, Mostafa Javadian, Robin H. Reibold, Miguel L. Villarreal, Benjamin Poulter, Shujun Song, William K. Smith

Acute toxicity of lampricides to non-target species of concern in the Lake Champlain watershed Acute toxicity of lampricides to non-target species of concern in the Lake Champlain watershed

Previous research evaluated the toxicity of the lampricide 4-nitro-3-(trifluoromethyl)phenol (TFM) and the combination of TFM with 1 % niclosamide (TFM:1%Nic) to multiple non-target species in the Laurentian Great Lakes. However, few toxicity studies have been conducted for species of concern in Lake Champlain (NY and VT). We conducted 12-hour flow-through toxicity tests with 4 species...
Authors
Gary N. Neuderfer, Lance E. Durfey, Michael T. Calloway, Stephen J. Smith, Justin Schueller

Documentation of a probable spawning run of cisco Coregonus artedi in the Spanish River, Ontario, Canada Documentation of a probable spawning run of cisco Coregonus artedi in the Spanish River, Ontario, Canada

Coregonines were historically diverse and abundant in the Laurentian Great Lakes but declined throughout the 19th and 20th centuries due to multiple factors, including overfishing, habitat degradation, and interactions with invasive species. Great Lakes fishery managers are now working to restore coregonines across the basin. An important aspect of restoration efforts is the...
Authors
Andrew Edgar Honsey, Ralph W. Tingley, Katie Victoria Anweiler, Cory Brant, Marc Chalupnicki, Chris Davis, Steve A. Farha, Paul William Fedorowicz, Todd Hayden, Philippa Kohn, Benjamin Scott Leonhardt, Brian O’Malley

Ecological function maintained despite mesomammal declines Ecological function maintained despite mesomammal declines

Mid-sized mammals (i.e., mesomammals) fulfill important ecological roles, serving as essential scavengers, predators, pollinators, and seed dispersers in the ecosystems they inhabit. Consequently, declines in mesomammal populations have the potential to alter ecological processes and fundamentally change ecosystems. However, ecosystems characterized by high functional redundancy, where...
Authors
Rebecca K. McKee, Paul J. Taillie, Kristen Hart, Christopher L. Lopez, Adam Sanjar, Robert A. McCleery

Leveraging local habitat suitability models to enhance restoration benefits for species of conservation concern Leveraging local habitat suitability models to enhance restoration benefits for species of conservation concern

Efforts to restore habitats and conserve wildlife species face many challenges that are exacerbated by limited funding and resources. Habitat restoration actions are often conducted across a range of habitat conditions, with limited information available to predict potential outcomes among local sites and identify those that may lead to the greatest returns on investment. Using the...
Authors
Jessica E. Shyvers, Nathan D. Van Schmidt, D. Joanne Saher, Julie A. Heinrichs, Michael S. O’Donnell, Cameron L. Aldridge

Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2022 annual report Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2022 annual report

Executive Summary The purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos (Vireo bellii pusillus) at Marine Corps Base Camp Pendleton (MCBCP or “Base”). Surveys for the Least Bell's Vireo were completed at MCBCP, California, between April 4 and July 12, 2022. Core...
Authors
Suellen Lynn, Michelle Treadwell, Barbara E. Kus

Trends in plant cover derived from vegetation plot data using ordinal zero-augmented beta regression Trends in plant cover derived from vegetation plot data using ordinal zero-augmented beta regression

Questions Plant cover values in vegetation plot data are bounded between 0 and 1, and cover is typically recorded in discrete classes with non-equal intervals. Consequently, cover data are skewed and heteroskedastic, which hampers the application of conventional regression methods. Recently developed ordinal beta regression models consider these statistical difficulties. Our primary...
Authors
Arco van Strien, Kathryn Irvine, Cas Retel

Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2021 annual report Distribution, abundance, and breeding activities of the Least Bell's Vireo at Marine Corps Base Camp Pendleton, California—2021 annual report

Executive Summary The purpose of this report is to provide the Marine Corps with an annual summary of abundance, breeding activity, demography, and habitat use of endangered Least Bell’s Vireos (Vireo bellii pusillus) at Marine Corps Base Camp Pendleton (MCBCP or “Base”). Surveys for the Least Bell's Vireo were completed at MCBCP, California, between April 5 and July 13, 2021. Core...
Authors
Suellen Lynn, Michelle Treadwell, Barbara E. Kus
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