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Publications

Filter Total Items: 41

Illegal dumping of oil and gas wastewater alters arid soil microbial communities

The Permian Basin, underlying southeast New Mexico and west Texas, is one of the most productive oil and gas (OG) provinces in the United States. Oil and gas production yields large volumes of wastewater with complex chemistries, and the environmental health risks posed by these OG wastewaters on sensitive desert ecosystems are poorly understood. Starting in November 2017, 39 illegal dumps, as def
Authors
Mitra Kashani, Mark A Engle, Douglas B. Kent, Terry G. Gregston, Isabelle M. Cozzarelli, Adam Mumford, Matthew S. Varonka, Cassandra Rashan Harris, Denise M. Akob

Nitrifying microorganisms linked to biotransformation of perfluoroalkyl sulfonamido precursors from legacy aqueous film forming foams

Drinking water supplies across the United States have been contaminated by firefighting and fire-training activities that use aqueous film-forming foams (AFFF) containing per- and polyfluoroalkyl substances (PFAS). Much of the AFFF is manufactured using electrochemical fluorination by 3M. Precursors with six perfluorinated carbons (C6) and non-fluorinated amine substituents make up approximately o
Authors
Bridger J. Ruyle, Lara Schultes, Denise M. Akob, Cassandra Rashan Harris, Michelle Lorah, Simon Vojta, Jitka Becanova, Shelly McCann, Heidi M. Pickard, Ann Pearson, Rainer Lohmann, Chad D. Vecitis, Elsie M. Sunderland

Acetylenotrophic and diazotrophic Bradyrhizobium sp. strain I71 from TCE-contaminated soils

AbstractAcetylene (C2H2) is a molecule rarely found in nature, with very few known natural sources, but acetylenotrophic microorganisms can use acetylene as their primary carbon and energy source. As of 2018 there were 15 known strains of aerobic and anaerobic acetylenotrophs; however, we hypothesize there may yet be unrecognized diversity of acetylenotrophs in nature. This study expands the known
Authors
Denise M. Akob, John M. Sutton, Timothy J. Bushman, Shaun Baesman, Edina Klein, Yesha Shrestha, Robert Andrews, Janna L. Fierst, Max Kolton, Sara Gushgari-Doyle, Ronald Oremland, John Freeman

Using biological responses to monitor freshwater post-spill conditions over 3 years in Blacktail Creek, North Dakota, USA

A pipeline carrying unconventional oil and gas (OG) wastewater spilled approximately 11 million liters of wastewater into Blacktail Creek, North Dakota, USA. Flow of the mix of stream water and wastewater down the channel resulted in storage of contaminants in the hyporheic zone and along the banks, providing a long-term source of wastewater constituents to the stream. A multi-level investigation
Authors
Aida Farag, David Harper, Isabelle M. Cozzarelli, Douglas B. Kent, Adam Mumford, Denise M. Akob, Travis W. Schaeffer, Luke R. Iwanowicz

Microbial community response to a bioaugmentation test to degrade trichloroethylene in a fractured rock aquifer, Trenton, N.J

Bioaugmentation is a promising strategy for enhancing trichloroethylene (TCE) degradation in fractured rock. However, slow or incomplete biodegradation can lead to stalling at degradation byproducts such as 1,2-dichloroethene (cis-DCE) and vinyl chloride (VC). Over the course of 7 years, we examined the response of groundwater microbial populations in a bioaugmentation test where an emulsified veg
Authors
Jennifer C. Underwood, Denise M. Akob, Michelle Lorah, Thomas E. Imbrigiotta, Ronald W. Harvey, Claire R. Tiedeman

Complete genome sequence of Rhodococcus opacus strain MoAcy1 (DSM 44186), an aerobic acetylenotroph isolated from soil

We report the genome of Rhodococcus opacus strain MoAcy1 (DSM 44186), an aerobic soil isolate capable of using acetylene as its primary carbon and energy source (acetylenotrophy). The genome is composed of a single circular chromosome of ∼8 Mbp and two closed plasmids, with a G+C content of 67.3%.
Authors
John M. Sutton, Timothy J. Bushman, Denise M. Akob, Janna L. Fierst

Oil and gas wastewater components alter streambed microbial community structure and function

The widespread application of directional drilling and hydraulic fracturing technologies expanded oil and gas (OG) development to previously inaccessible resources. A single OG well can generate millions of liters of wastewater, which is a mixture of brine produced from the fractured formations and injected hydraulic fracturing fluids (HFFs). With thousands of wells completed each year, safe manag
Authors
Denise M. Akob, Adam Mumford, Andrea Fraser, Cassandra Rashan Harris, William H. Orem, Matthew S. Varonka, Isabelle M. Cozzarelli

Draft genome sequence of Bordetella sp. strain FB-8, isolated from a former uranium mining area in Germany

Here, we present the draft genome sequence of Bordetella sp. strain FB-8, a mixotrophic iron-oxidizing bacterium isolated from creek sediment in the former uranium-mining district of Ronneburg, Germany. To date, iron oxidation has not been reported in Bordetella species, indicating that FB-8 may be an environmentally important Bordetella sp.
Authors
Cassandra Rashan Harris, Denise M. Akob, Maria Fabisch, Felix Beulig, Tanya Woyke, Nicole Shapiro, Alla Lapidus, Hans-Peter Klenk, Kirsten Küsel

Acetylene-fueled trichloroethene reductive dechlorination in a groundwater enrichment culture

In aquifers, acetylene (C2H2) is a product of abiotic degradation of trichloroethene (TCE) catalyzed by in situ minerals. C2H2 can, in turn, inhibit multiple microbial processes including TCE dechlorination and metabolisms that commonly support dechlorination, in addition to supporting the growth of acetylenotrophic microorganisms. Previously, C2H2 was shown to support TCE reductive dechlorination
Authors
Sara Gushgari-Doyle, Ronald S. Oremland, Ray Keren, Shaun Baesman, Denise M. Akob, Jillian F. Banfield, Lisa Alvarez-Cohen

Mixotrophic iron-oxidizing Thiomonas isolates from an acid mine drainage-affected creek

Natural attenuation of heavy metals occurs via coupled microbial iron cycling and metal precipitation in creeks impacted by acid mine drainage (AMD). Here, we describe the isolation, characterization, and genomic sequencing of two iron-oxidizing bacteria (FeOB) species: Thiomonas ferrovorans FB-6 and Thiomonas metallidurans FB-Cd, isolated from slightly acidic (pH 6.3), Fe-rich, AMD-impacted creek
Authors
Denise M. Akob, Michelle Hallenbeck, Felix Beulig, Maria Fabisch, Kirsten Kusel, Jessica L Keffer, Tanja Woyke, Nicole Shapiro, Alla Lapidus, Hans-Peter Klenk, Clara Chan

Geochemical and geophysical indicators of oil and gas wastewater can trace potential exposure pathways following releases to surface waters

Releases of oil and gas (OG) wastewaters can have complex effects on stream-water quality and downstream organisms, due to sediment-water interactions and groundwater/surface water exchange. Previously, elevated concentrations of sodium (Na), chloride (Cl), barium (Ba), strontium (Sr), and lithium (Li), and trace hydrocarbons were determined to be key markers of OG wastewater releases when combine
Authors
Isabelle M. Cozzarelli, Douglas B. Kent, Martin A. Briggs, Mark A Engle, Adam Benthem, Katherine Skalak, Adam Mumford, Jeanne B. Jaeschke, Aida Farag, John W. Lane, Denise M. Akob

Compositional analysis of formation water geochemistry and microbiology of commercial and carbon dioxide-rich wells in the southwestern United States

Studies of naturally occurring subsurface carbon dioxide (CO2) accumulations can provide useful information for potential CO2 injection projects; however, the microbial communities and formation water geochemistry of most reservoirs are understudied. Formation water and microbial biomass were sampled at four CO2-rich reservoir sites: two within Bravo Dome, a commercial CO2 field in New Mexico; one
Authors
Jenna L. Shelton, Robert S. Andrews, Denise M. Akob, Christina A. DeVera, Adam C. Mumford, Mark Engle, Michelle R. Plampin, Sean T. Brennan