Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42888
Net CO2 emissions from dry inland waters persist in the presence of vegetation Net CO2 emissions from dry inland waters persist in the presence of vegetation
Many inland waters are shrinking due to shifts in climate and water diversion for human uses. As they dry out, their exposed sediments emit large amounts of carbon dioxide (CO2) to the atmosphere. However, current global estimates of CO2 emissions from dry inland waters are derived exclusively from bare sediment dark-chamber measurements that do not account for the colonization of...
Authors
K. Sharma, Soren Brothers, S. Bernal, Núria Catalán, P. Keller, M. Koschorreck, S. Kosten, C. Leigh, D. von Schiller, A. Pastor, A. Larrañaga, A. Ari, A. Camacho-Santamans, A. Grinham, A. Lupon, A. Linkhorst, A. Elosegi, B. Obrador, B. D. Eyre, C. Trochine, C. C. Muniz, C. Feijoo, C. Duvert, E. Moreno-Ostos, E. Jacqueline Garcia, E. S. Oliveria, F. Cuassolo, H. R. Fernandez, J. Yeo, J. Oakes, J. R. Paranaíba, J. Pegg, J. Anselmo, J. J. Montes-Perez, L. van den Heuvel, L. Ran, L. L. Wilkinson, L. Gomez-Gener, M. Arroita, M. Shanafield, M. L. Gultemirian, M. I. Arce, M. Cobo, M. M. Sanchez-Montoya, N. Barros, N. Wells, N. Karakaya, P. Erturk Ari, Q. Struik, R. Aben, R. Rimas, S. Kumar, Sheel Bansal, S. Sarkar, S. Rodriguez-Gomez, T. Huang, T. Silverthorn, T. Datry, V. Diaz Villanueva, R. Marce
Adaptive capacity of freshwater organisms in North America: Current understanding and future applications Adaptive capacity of freshwater organisms in North America: Current understanding and future applications
Freshwater species are increasingly threatened by climate change, yet our ability to assess their vulnerability remains incomplete. Typically, climate change vulnerability assessments (CCVAs) evaluate three components: exposure, sensitivity, and adaptive capacity. Adaptive capacity, defined as the ability of a species to adjust to changing conditions, provides critical insight into how...
Authors
Holly Susan Embke, Karen M Alofs, David Bunnell, Christy M. Caudill, Cindy Chu, Corey Garland Dunn, Kaelyn Fogelman, Spencer T. Gardner, Tomas O Hook, Scott A. Jackson, Matthew Keefer, Scott T Koenigbauer, Olivia E. LeDee, Stuart A. Ludsin, Abigail Lynch, Bonnie Myers, Elizabeth A. Nyboer, Travis Seaborn, Cory Suski, Lindsey Thurman, Annika W. Walters, Jacob Thomas Westhoff
Distribution and Abundance of Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) at the Sepulveda Dam Basin, Los Angeles County, California—2025 Data Summary Distribution and Abundance of Least Bell’s Vireo (Vireo bellii pusillus) and Southwestern Willow Flycatcher (Empidonax traillii extimus) at the Sepulveda Dam Basin, Los Angeles County, California—2025 Data Summary
Executive Summary We surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo) and Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along Bull Creek, Haskell Creek, and the Los Angeles River (Sepulveda Dam project area) in Los Angeles County, California, in 2025. Four vireo surveys were completed between April 16 and July 2, 2025, and three flycatcher...
Authors
Lisa D. Allen, Barbara E. Kus
Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys at the city of Carlsbad Preserve, San Diego County, California—2025 data summary Southwestern Willow Flycatcher (Empidonax traillii extimus) surveys at the city of Carlsbad Preserve, San Diego County, California—2025 data summary
Executive Summary We surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) at five survey areas within the City of Carlsbad Preserve, Carlsbad, California, in 2025. Three flycatcher surveys were completed between May 16 and June 30, 2025. One transient flycatcher was observed at the Lake Calavera survey area in the City of Carlsbad Preserve in 2025.
Authors
Lisa D. Allen, Barbara E. Kus
Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus), Southwestern Willow Flycatchers (Empidonax traillii extimus), and Coastal California Gnatcatchers (Polioptila californica californica) at the Carbon Canyon Dam Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus), Southwestern Willow Flycatchers (Empidonax traillii extimus), and Coastal California Gnatcatchers (Polioptila californica californica) at the Carbon Canyon Dam
Executive Summary We surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo), Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher), and Coastal California Gnatcatchers (Polioptila californica californica; gnatcatcher) at the Carbon Canyon Dam study area near Brea, California, in 2025. Four gnatcatcher and vireo surveys were completed between April 22 and June...
Authors
Scarlett L. Howell, Barbara E. Kus
Field performance evaluation of a bayluscide 20-percent suspension concentrate formulation Field performance evaluation of a bayluscide 20-percent suspension concentrate formulation
Petromyzon marinus (sea lamprey) is a parasitic, invasive fish of the Laurentian Great Lakes. Since the late 1950s, the Great Lakes Fishery Commission has implemented an integrated Sea Lamprey Control Program (SLCP) that relies on two lampricidal chemicals: 3-(trifluoromethyl)-4-nitrophenol (TFM) and niclosamide. Niclosamide is applied using a bayluscide 20-percent emulsifiable...
Authors
Nadia Carmosini, Justin R. Schueller, Courtney A. Kirkeeng, Anne M. Wood, Lori A. Criger, James A. Luoma
Behavioral shifts mask the success of legislation and outreach for endangered species recovery Behavioral shifts mask the success of legislation and outreach for endangered species recovery
A fundamental challenge in conservation is assessing the efficacy of recovery actions to optimize endangered species management. Considerable recent attention has focused on effective measures to counter the endangerment of avian scavengers, which have declined worldwide, primarily due to poisoning. One iconic example is efforts to recover the critically endangered California condor...
Authors
Victoria J. Bakker, Daniel F. Doak, Alacia Welch, L. Joseph Burnett, María C. Porras Peña, Joseph Brandt, Sharon A. Poessel, Steve Kirkland, Rachel Wolstenholme, Daniel Ryan, Mike Stake, Arianna Punzalan, Nacho Vilchis, Melissa A. Braham, Myra E. Finkelstein
Current and near-future conditions of aquatic spatial data for use in ecological models in the United States Current and near-future conditions of aquatic spatial data for use in ecological models in the United States
To address increasing demand for ecological models of aquatic species that can inform the management of national freshwater resources, we leveraged manager input to develop suites of environmental data layers characterizing freshwater habitats for the contiguous United States. Using the National Hydrography Dataset, these new data cover lentic and lotic systems under current and near...
Authors
Grace C. Henderson, Peder Engelstad, Cameron J. Reimer, Shelby K. LeClare, Linnea S. Fraser, Demetra A. Williams, Keana S. Shadwell, Wesley M. Daniel, Ian A. Pfingsten, Catherine S. Jarnevich
Dog attacks on wild desert tortoises: A risk model Dog attacks on wild desert tortoises: A risk model
We retrospectively compiled a database of 6,727 live, wild Agassiz's desert tortoises (Gopherus agassizii) and evaluated them for clinical signs of trauma to shell and limbs at 50 sites in the Mojave and Colorado (western Sonoran) deserts of California, USA, spanning the years 1977–2006. Our objectives were to 1) identify tortoises with severe trauma to shell, limbs, and gular horns...
Authors
Andrea S. Carlson, Kristin H. Berry, Jeremy S. Mack
Invasion resistance varies by fuel break type in sagebrush ecosystems Invasion resistance varies by fuel break type in sagebrush ecosystems
Background Wildfire is an increasingly important driver of changes within sagebrush (Artemisia spp. L.) ecosystems of the western USA, often resulting in increased spread of exotic annual grasses, such as cheatgrass (Bromus tectorum L.), and subsequent losses of native vegetation and wildlife habitat. Fuel breaks— areas of land treated to reduce or redistribute fuel loads — are widely...
Authors
Austin L. Nash, Brianne E. Brussee, Cali L. Weise, Douglas J. Shinneman, Susan K. McIlroy, Sarah C. Webster, Steven R. Mathews, Seth J. Dettenmaier, Lea A. Condon, Michele R. Crist, Cameron L. Aldridge, Julie A. Heinrichs, Mark A. Ricca, Shawn T. O’Neil, Peter S. Coates
Summertime methane and carbon dioxide emission rates and associated variables from a national-scale survey of 146 reservoirs in the United States Summertime methane and carbon dioxide emission rates and associated variables from a national-scale survey of 146 reservoirs in the United States
Reservoirs are globally important sources of greenhouse gases, but the magnitude of their emissions is highly uncertain. Here we present data for 146 reservoirs from two surveys of reservoir methane and carbon dioxide emissions, one at the regional scale in the midwestern United States and one at the national scale in the conterminous United States, plus data from one reservoir in...
Authors
Jake J. Beaulieu, Bridget R. Deemer, R.M. Pilla, Kenneth J. Forshay, J.W. Hollister, S.A. Jacobs, J.T. Walker, P.T. Leinenbach, Natalie A. Griffiths, S.D. Shivers, A.O. Tatters, K.N. Buckler, J.W. Corra, Ryan W. Daly, A.N. Djurkovic, S.R. Fulgham, P.L. Goodwin, L.G. Herger, M.W. Jones, N.J. Jones, L.A. Juilfs, C.M. Langstroth, M.E. Mitchell, J.R. Oliveria, B.M. Richmond, J.W. Schroeder
Epigenetics in captivity: Restoring wild phenotypes in captive-reared salmonids Epigenetics in captivity: Restoring wild phenotypes in captive-reared salmonids
Captive rearing is a common practice for the stocking, conservation, and supplementation of fish species worldwide, but captive-reared fish can exhibit altered phenotypes leading to reduced fitness in nature compared to wild conspecifics. In salmonids, certain studies have found limited genetic differentiation between wild and captive-reared fish. However, documented changes in gene...
Authors
Tia Attfield, Andrew Edgar Honsey, Amanda Susanne Ackiss, Andreas Luek, Brian Meagher, Hayley Nuetzel, Ilana Koch, Julien April, Kristy Wakeling, Kyle Wellband, Raphael Bouchard, Sarah J. Lehnhert, Shawn R. Narum, Timothy Healy, Trevor E. Pitcher, Clare J. Venney