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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42874

Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology

Recovery of imperiled fishes can be achieved through suppression of invasives, but outcomes may vary with environmental conditions. We studied the response of imperiled desert fishes to an invasive brown (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) suppression program in a Colorado River tributary, with natural flow and longitudinal variation in thermal characteristics. We...
Authors
Brian D Healy, Robert Schelly, Charles B. Yackulic, Emily Omana Smith, Phaedra E. Budy

Assessing the risks posed by SARS-CoV-2 in and via North American bats — Decision framing and rapid risk assessment Assessing the risks posed by SARS-CoV-2 in and via North American bats — Decision framing and rapid risk assessment

The novel β-coronavirus, SARS-CoV-2, may pose a threat to North American bat populations if bats are exposed to the virus through interaction with humans, if the virus can subsequently infect bats and be transmitted among them, and if the virus causes morbidity or mortality in bats. Further, if SARS-CoV-2 became established in bat populations, it could possibly serve as a source for new...
Authors
Michael C. Runge, Evan H. Campbell Grant, Jeremy T. H. Coleman, Jonathan D. Reichard, Samantha E.J. Gibbs, Paul M. Cryan, Kevin J. Olival, Daniel P. Walsh, David S. Blehert, M. Camille Hopkins, Jonathan M. Sleeman

Development of a quantitative PCR assay for detecting Egeria densa in environmental DNA samples Development of a quantitative PCR assay for detecting Egeria densa in environmental DNA samples

Brazilian elodea (Egeria densa) is an invasive freshwater plant that demonstrates widespread ecological impacts in freshwater ecosystems and causes substantial economic damage. Here, we developed an environmental DNA assay for detection of E. densa to provide resource managers with a tool for early detection, identification, and monitoring of invasive populations.
Authors
Dorothy M. Chase, Lauren M Kuehne, Julian D. Olden, Carl O. Ostberg

Validating climate‐change refugia: Empirical bottom‐up approaches to support management actions Validating climate‐change refugia: Empirical bottom‐up approaches to support management actions

Efforts to conserve biodiversity increasingly focus on identifying climate‐change refugia – areas relatively buffered from contemporary climate change over time that enable species persistence. Identification of refugia typically includes modeling the distribution of a species’ current habitat and then extrapolating that distribution given projected changes in temperature and...
Authors
Cameron W. Barrows, Aaron R. Ramirez, Lynn C. Sweet, Toni Lyn Morelli, Constance I. Millar, Neil Frakes, Jane Rodgers, Mary Frances Mahalovich

Climate‐change refugia: Biodiversity in the slow lane Climate‐change refugia: Biodiversity in the slow lane

Climate‐change adaptation focuses on conducting and translating research to minimize the dire impacts of anthropogenic climate change, including threats to biodiversity and human welfare. One adaptation strategy is to focus conservation on climate‐change refugia (that is, areas relatively buffered from contemporary climate change over time that enable persistence of valued physical...
Authors
Toni Lyn Morelli, Cameron W. Barrows, Aaron R. Ramirez, Jennifer M. Cartwright, David D. Ackerly, Tatiana D. Eaves, Joseph L. Ebersole, Meg A. Krawchuk, Benjamin Letcher, Mary Frances Mahalovich, Garrett Meigs, Julia Michalak, Constance I. Millar, Rebecca M. Quinones, Diana Stralberg, James H. Thorne

Locality note for rubber boa Locality note for rubber boa

CHARINA BOTTAE BOTTAE (N. Rubber Boa), USA: CALIFORNIA: Monterey Co.: Landels-Hill Big Creek Reserve, east side of Hwy. 1, 80 km (50 miles) south of Carmel, Calif., (36.0719055 N 121.5991555 W) 19 June, 2009; (36.0703611 N 121.5982222 W) 06 July 2009; (36.9516666 N 121.5991944 W) 27 July 2009. In chronological order, photo vouchers MVZObs:Herp:26, MVZObs:Herp:27, MVZObs:Herp:28. Verified...
Authors
Joseph A. Tomoleoni, Richard F Hoyer

Validation of laboratory tests for infectious diseases in wild mammals: Review and recommendations Validation of laboratory tests for infectious diseases in wild mammals: Review and recommendations

Evaluation of the diagnostic sensitivity (DSe) and specificity (DSp) of tests for infectious diseases in wild animals is challenging, and some of the limitations may affect compliance with the OIE-recommended test validation pathway. We conducted a methodologic review of test validation studies for OIE-listed diseases in wild mammals published between 2008 and 2017 and focused on study...
Authors
Jia Beibei, David Colling, David E. Stallknecht, David S. Blehert, John Bingham, Beate Crossley, Debbie Eagles, Ian A Gardner

An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

Background Use of genomic tools to characterize wildlife populations has increased in recent years. In the past, genetic characterization has been accomplished with more traditional genetic tools (e.g., microsatellites). The explosion of genomic methods and the subsequent creation of large SNP datasets has led to the promise of increased precision in population genetic parameter...
Authors
Shawna J Zimmerman, Cameron L. Aldridge, Sara J. Oyler-McCance

Laboratory trials to evaluate carbon dioxide as a potential behavioral control method for invasive red swamp (Procambarus clarkii) and rusty crayfish (Faxonius rusticus) Laboratory trials to evaluate carbon dioxide as a potential behavioral control method for invasive red swamp (Procambarus clarkii) and rusty crayfish (Faxonius rusticus)

Few effective strategies are available to control invasive crayfishes. Carbon dioxide (CO2) acts as a behavioral deterrent for invasive fishes and could be a useful crayfish control tool. The objective of this laboratory study was to quantify CO2 concentrations that caused red swamp crayfish (RSC; Procambarus clarkii) and rusty crayfish (RYC; Faxonius rusticus) avoidance behavior...
Authors
Kim T. Fredricks, John A. Tix, Justin R. Smerud, Aaron R. Cupp

The effects of management practices on grassland birds—Chestnut-collared Longspur (Calcarius ornatus) The effects of management practices on grassland birds—Chestnut-collared Longspur (Calcarius ornatus)

Keys to Chestnut-collared Longspur (Calcarius ornatus) management are providing and maintaining native pastures with fairly short overall vegetation and sparse litter accumulation but with areas of taller and denser vegetation and accumulated litter for nesting, and tailoring grazing intensity to local conditions. Chestnut-collared Longspurs have been reported to use habitats with 10–77
Authors
Jill A. Shaffer, Lawrence D. Igl, Douglas H. Johnson, Marriah L. Sondreal, Christopher M. Goldade, Melvin P. Nenneman, Travis L. Wooten, Betty R. Euliss

Climate change projected to reduce prescribed burning opportunities in the south-eastern United States Climate change projected to reduce prescribed burning opportunities in the south-eastern United States

Prescribed burning is a critical tool for managing wildfire risks and meeting ecological objectives, but its safe and effective application requires that specific meteorological criteria (a ‘burn window’) are met. Here, we evaluate the potential impacts of projected climatic change on prescribed burning in the south-eastern United States by applying a set of burn window criteria that...
Authors
John A Kupfer, Adam J. Terando, Peng Gao, Casey Teske, J Kevin Hiers

Disturbance refugia within mosaics of forest fire, drought, and insect outbreaks Disturbance refugia within mosaics of forest fire, drought, and insect outbreaks

Disturbance refugia – locations that experience less severe or frequent disturbances than the surrounding landscape – provide a framework to highlight not only where and why these biological legacies persist as adjacent areas change but also the value of those legacies in sustaining biodiversity. Recent studies of disturbance refugia in forest ecosystems have focused primarily on fire...
Authors
Meg A. Krawchuk, Garrett Meigs, Jennifer M. Cartwright, Jonathan D. Coop, Raymond J. Davis, Andres Holz, Crystal A. Kolden, Arjan J.H. Meddens
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