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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Characterization of pallid sturgeon (Scaphirhynchus albus) spawning habitat in the Lower Missouri River Characterization of pallid sturgeon (Scaphirhynchus albus) spawning habitat in the Lower Missouri River

Acipenseriformes (sturgeons and paddlefish) globally have declined throughout their range due to river fragmentation, habitat loss, overfishing, and degradation of water quality. In North America, pallid sturgeon (Scaphirhynchus albus) populations have experienced poor to no recruitment, or substantial levels of hybridization with the closely related shovelnose sturgeon (S. platorynchus)...
Authors
Caroline M. Elliott, Aaron J. DeLonay, Kimberly Chojnacki, Robert B. Jacobson

Divergent genes encoding the putative receptors for growth hormone and prolactin in sea lamprey display distinct patterns of expression Divergent genes encoding the putative receptors for growth hormone and prolactin in sea lamprey display distinct patterns of expression

Growth hormone receptor (GHR) and prolactin receptor (PRLR) in jawed vertebrates were thought to arise after the divergence of gnathostomes from a basal vertebrate. In this study we have identified two genes encoding putative GHR and PRLR in sea lamprey (Petromyzon marinus) and Arctic lamprey (Lethenteron camtschaticum), extant members of one of the oldest vertebrate groups, agnathans
Authors
Ningping Gong, Diogo Ferreira-Martins, Stephen D. McCormick, Mark Sheridan

Conservation genomics in a changing arctic Conservation genomics in a changing arctic

Although logistically challenging to study, the Arctic is a bellwether for global change and is becoming a model for questions pertinent to the persistence of biodiversity. Disruption of Arctic ecosystems is accelerating, with impacts ranging from mixing of biotic communities to individual behavioral responses. Understanding these changes is crucial for conservation and sustainable...
Authors
Jocelyn P. Colella, Sandra L. Talbot, Christian Brochmann, Eric B. Taylor, Eric P. Hoberg, Joseph A. Cook

Final project memorandum: Identifying conservation objectives for the Gulf Coast habitats of the black skimmer and gull-billed tern Final project memorandum: Identifying conservation objectives for the Gulf Coast habitats of the black skimmer and gull-billed tern

Many shorebirds and nearshore waterbirds are of conservation concern across the Gulf of Mexico due to stressors such as human disturbance, predation, and habitat loss and degradation. Conservation and protection of these birds is important for the functioning of healthy ecosystems and for maintaining biodiversity in North America. Consequently, resource managers along the Gulf need...
Authors
James P. Cronin

Pacific Continental Shelf Environmental Assessment (PaCSEA): Characterization of Seasonal Water Masses within the Northern California Current System Using Airborne Remote Sensing off Northern California, Oregon, and Washington, 2011–2012 Pacific Continental Shelf Environmental Assessment (PaCSEA): Characterization of Seasonal Water Masses within the Northern California Current System Using Airborne Remote Sensing off Northern California, Oregon, and Washington, 2011–2012

Here, we use ocean color measurements (Figure 1) and sea surface temperature (SST) data collected using sensors mounted on low-flying aircraft to characterize NCCS water masses and identify patterns among seasons and between years. To accomplish this, we applied k-means clustering to measured and derived ecologically-relevant physical and bio-optical variables (SST, Chla, absorbance by...
Authors
J A Schulien, Josh Adams, Jonathan J. Felis

Acute toxicity and clotting times of anticoagulant rodenticides to red-toothed (Odonus niger) and black (Melichthys niger) triggerfish, fathead minnow (Pimephales promelas), and largemouth bass (Micropterus salmoides) Acute toxicity and clotting times of anticoagulant rodenticides to red-toothed (Odonus niger) and black (Melichthys niger) triggerfish, fathead minnow (Pimephales promelas), and largemouth bass (Micropterus salmoides)

Anticoagulant rodenticides (ARs) areused in rateradication efforts on island wildlife refuges. ARbait pellets can get into coralreefareasduring broadcasting and leadto exposure ofnon-target organisms, such as marine fishes. The objective of this study was to determine the sensitivity of representative saltwater fishes, Red-toothed triggerfish (Odonus niger) and Black triggerfish (Melichthys...
Authors
Rachelle Riegerix, Mike Tanner, Robert W. Gale, Donald E. Tillitt

Influence of remediation on sediment toxicity within the Grand Calumet River, Indiana, USA Influence of remediation on sediment toxicity within the Grand Calumet River, Indiana, USA

The Grand Calumet River (GCR), located in northern Indiana, is contaminated due to a wide range of historical industrial activities. This study was conducted to determine the influence of sediment remediation within the GCR on concentrations of chemical contaminants and toxicity to sediment-dwelling organisms. Between 2005 and 2016, sediments with high concentrations of metals and toxic...
Authors
Jeffery A. Steevens, John M. Besser, Rebecca A. Dorman, Daniel W. Sparks

Review of studies of composition, toxicology and human health impacts of wastewater from unconventional oil and gas development from shale Review of studies of composition, toxicology and human health impacts of wastewater from unconventional oil and gas development from shale

Unconventional oil and gas (UOG) extractions has produced large economic benefits. However, prudent management of UOG wastes necessitates a thorough understanding of the complex composition, fate, and potential impacts of wastewater releases. UOG production results in large volumes of wastewater. Despite limited re-use of the wastewater, the majority needs to be disposed of, usually by...
Authors
Lynn M. Crosby, William H. Orem

Identification of management thresholds of urban development in support of aquatic biodiversity conservation Identification of management thresholds of urban development in support of aquatic biodiversity conservation

Urbanization degrades stream ecosystems and causes loss of bodiversity. Using benthic macroinvertebrates as a surragate for overall aquatic diversity, we conducted a series of analytical approaches to derive management thresholds of urban development designed to link ecological responses to the primary management goal of protecting aquatic diversity in streams within the Delaware Water...
Authors
Craig D. Snyder, John A. Young

Mortality of endangered juvenile Lost River Suckers associated with cyanobacteria blooms in mesocosms in Upper Klamath Lake, Oregon Mortality of endangered juvenile Lost River Suckers associated with cyanobacteria blooms in mesocosms in Upper Klamath Lake, Oregon

Unsustainably high mortality within the first 2 years of life prevents endangered Lost River Suckers Deltistes luxatus in Upper Klamath Lake, Oregon, from recruiting to spawning populations. Massive blooms of the cyanobacterium Aphanizomenon flos‐aquae and their subsequent death and decay in the lake (bloom‐crashes) are associated with high pH, low percent oxygen saturation, high total...
Authors
Summer M. Burdick, Danielle M Hereford, Carla M. Conway, Nathan V Banet, Rachel L. Powers, Barbara A. Martin, Diane G. Elliott

Differences in antibody responses against Chelonid Alphaherpesvirus 5 (ChHV5) suggest differences in virus biology in ChHV5-seropositive green turtles from Hawaii and ChHV5-seropositive green turtles from Florida Differences in antibody responses against Chelonid Alphaherpesvirus 5 (ChHV5) suggest differences in virus biology in ChHV5-seropositive green turtles from Hawaii and ChHV5-seropositive green turtles from Florida

Fibropapillomatosis (FP) is a tumor disease associated with a herpesvirus (chelonid herpesvirus 5 [ChHV5]) that affects mainly green turtles globally. Understanding the epidemiology of FP has been hampered by a lack of robust serological assays to monitor exposure to ChHV5. This is due in part to an inability to efficiently culture the virus in vitro for neutralization assays. Here, we...
Authors
Thierry M. Work, Julie Dagenais, Anna Willimann, George Balazs, Kate Mansfield, Mathias Ackermann

Expert bioblitzes facilitate non-native fish tracking and interagency partnerships Expert bioblitzes facilitate non-native fish tracking and interagency partnerships

Documenting the distribution and composition of non-native species populations can be challenging, especially when species cross jurisdictional boundaries that require interagency coordination. Herein I report the development of three tools that have been used in Florida over the past seven years to assist with tracking of non-native fishes: 1) an overarching organization to increase...
Authors
Pamela J. Schofield
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