Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42884
An analytical framework for estimating aquatic species density from environmental DNA An analytical framework for estimating aquatic species density from environmental DNA
Environmental DNA (eDNA) analysis of water samples is on the brink of becoming a standard monitoring method for aquatic species. This method has improved detection rates over conventional survey methods and thus has demonstrated effectiveness for estimation of site occupancy and species distribution. The frontier of eDNA applications, however, is to infer species density. Building upon...
Authors
Thierry Chambert, David S. Pilliod, Caren S. Goldberg, Hideyuki Doi, Teruhiko Takahara
Temporal shift of sea turtle nest sites in an eroding barrier island beach Temporal shift of sea turtle nest sites in an eroding barrier island beach
Shoreline changes affect functionality of a sandy beach as a wildlife habitat and coastal erosion is among the primary causes of the changes. We examined temporal shifts in locations where loggerheads placed nests in relation to coastal erosion along a barrier island beach in the northern Gulf of Mexico. We first confirmed consistency in long-term (1855–2001), short-term (1976–2001), and...
Authors
Ikuko Fujisaki, Margaret M. Lamont, Raymond R. Carthy
A simplified field protocol for genetic sampling of birds using buccal swabs A simplified field protocol for genetic sampling of birds using buccal swabs
DNA sampling is an essential prerequisite for conducting population genetic studies. For many years, blood sampling has been the preferred method for obtaining DNA in birds because of their nucleated red blood cells. Nonetheless, use of buccal swabs has been gaining favor because they are less invasive yet still yield adequate amounts of DNA for amplifying mitochondrial and nuclear...
Authors
Julia T. Vilstrup, Thomas D. Mullins, Mark P. Miller, Will McDearman, Jeffrey R. Walters, Susan M. Haig
Assessment of distribution and abundance estimates for Mariana swiftlets (Aerodramus bartschi) via examination of survey methods Assessment of distribution and abundance estimates for Mariana swiftlets (Aerodramus bartschi) via examination of survey methods
We described past and present distribution and abundance data to evaluate the status of the endangered Mariana Swiftlet (Aerodramus bartschi), a little-known echolocating cave swiftlet that currently inhabits 3 of 5 formerly occupied islands in the Mariana archipelago. We then evaluated the survey methods used to attain these estimates via fieldwork carried out on an introduced...
Authors
Nathan C. Johnson, Susan M. Haig, Stephen M. Mosher
Effect of cattle exclosures on Columbia Spotted Frog abundance Effect of cattle exclosures on Columbia Spotted Frog abundance
Livestock grazing is an important land use in the western USA and can have positive or negative effects on amphibians. Columbia Spotted Frog (Rana luteiventris) often use ponds that provide water for cattle. We conducted a long-term manipulative study on US Forest Service land in northeastern Oregon to determine the effects of full and partial exclosures that limited cattle access to...
Authors
M. J. Adams, Christopher Pearl, Thierry Chambert, Brome McCreary, Stephanie Galvan, Jennifer Rowe
Rare long-distance dispersal of the Island Night Lizard, Xantusia riversiana, maintains high diversity in a fragmented environment Rare long-distance dispersal of the Island Night Lizard, Xantusia riversiana, maintains high diversity in a fragmented environment
The Island Night Lizard (Xantusia riversiana) is endemic to three of the Channel Islands off the coast of California, USA. Introduced species such as goats, sheep, and cats have profoundly affected the fauna and flora of the islands for over 150 years, but most of these non-native species have been recently removed. We measured the distribution of genetic diversity in Island Night...
Authors
Ryan P. O’Donnell, Charles A. Drost, Gary M. Fellers, Benjamin A. Crabb, Karen E. Mock
Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat
In the context of delta restoration and its impact on salmonid rearing, success is best evaluated based on whether out-migrating juvenile salmon can access and benefit from suitable estuarine habitat. Here, we integrated 3 years of post-restoration monitoring data including habitat availability, invertebrate prey biomass, and juvenile Chinook salmon (Oncorhynchus tshawytscha)...
Authors
Melanie J. Davis, Christopher S. Ellings, Isa Woo, Sayre Hodgson, Kimberly A. Larsen, Glynnis Nakai
Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios Waterbird habitat in California's Central Valley basins under climate, urbanization, and water management scenarios
California's Central Valley provides critical, but threatened habitat and food resources for migrating and wintering waterfowl, shorebirds, and other waterbirds. The Central Valley is comprised of nine basins that were defined by the Central Valley Joint Venture (CVJV) to assist in conservation planning. Basins vary in composition and extent of habitats, which primarily include croplands...
Authors
Elliott Matchett, Joseph P. Fleskes
Occurrence of Batrachochytrium dendrobatidis in anurans of the Mediterranean region of Baja California, México Occurrence of Batrachochytrium dendrobatidis in anurans of the Mediterranean region of Baja California, México
Chytridiomycosis is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd) and is regarded as one of the most significant threats to global amphibian populations. In México, Bd was first reported in 2003 and has now been documented in 13 states. We visited 33 localities and swabbed 199 wild-caught anurans from 7 species (5 native, 2 exotic) across the Mediterranean region of...
Authors
Anny Peralta-Garcia, Andrea J. Adams, Cheryl J. Briggs, Patricia Galina-Tessaro, Jorge H. Valdez-Villavicencio, Bradford Hollingsworth, H. Bradley Shaffer, Robert N. Fisher
Enhanced invertebrate prey production following estuarine restoration supports foraging for multiple species of juvenile salmonids (Oncorhynchus spp.) Enhanced invertebrate prey production following estuarine restoration supports foraging for multiple species of juvenile salmonids (Oncorhynchus spp.)
Estuaries provide crucial foraging resources and nursery habitat for threatened populations of anadromous salmon. As such, there has been a global undertaking to restore habitat and tidal processes in modified estuaries. The foraging capacity of these ecosystems to support various species of out-migrating juvenile salmon can be quantified by monitoring benthic, terrestrial, and pelagic
Authors
Isa Woo, Melanie J. Davis, Christopher S. Ellings, Glynnis Nakai, John Y. Takekawa, Susan E.W. De La Cruz
Artificial light at night confounds broad-scale habitat use by migrating birds Artificial light at night confounds broad-scale habitat use by migrating birds
With many of the world's migratory bird populations in alarming decline, broad-scale assessments of responses to migratory hazards may prove crucial to successful conservation efforts. Most birds migrate at night through increasingly light-polluted skies. Bright light sources can attract airborne migrants and lead to collisions with structures, but might also influence selection of...
Authors
James D. McLaren, Jeffrey J. Buler, Tim Schreckengost, Jaclyn A. Smolinsky, Matthew Boone, E. Emiel van Loon, Deanna K. Dawson, Eric L. Walters
Conservation and restoration of mangroves: Global status, perspectives, and prognosis Conservation and restoration of mangroves: Global status, perspectives, and prognosis
Mangrove forests provide critical services around the globe to both human populations and the ecosystems they occupy. However, losses of mangrove habitat of more than 50% have been recorded in some parts of the world, and these losses are largely attributable to human activities. The importance of mangroves and the threats to their persistence have long been recognized, leading to...
Authors
Stephanie S. Romanach, Donald L. DeAngelis, Hock Lye Koh, Yuhong Li, Su Yean Teh, Raja Sulaiman Raja Barizan, Lu Zhai