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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42884

Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator

Localized ecological conditions have the potential to induce variation in population characteristics such as size distributions and body conditions. The ability to generalize the influence of ecological characteristics on such population traits may be particularly meaningful when those traits influence prospects for successful management interventions. To characterize variability in...
Authors
Shane R. Siers, Julie A. Savidge, Robert Reed

A multistate dynamic site occupancy model for spatially aggregated sessile communities A multistate dynamic site occupancy model for spatially aggregated sessile communities

Estimation of transition probabilities of sessile communities seems easy in principle but may still be difficult in practice because resampling error (i.e. a failure to resample exactly the same location at fixed points) may cause significant estimation bias. Previous studies have developed novel analytical methods to correct for this estimation bias. However, they did not consider the...
Authors
Keiichi Fukaya, J. Andrew Royle, Takehiro Okuda, Masahiro Nakaoka, Takashi Noda

Evaluating species-specific changes in hydrologic regimes: an iterative approach for salmonids in the Greater Yellowstone Area (USA) Evaluating species-specific changes in hydrologic regimes: an iterative approach for salmonids in the Greater Yellowstone Area (USA)

Despite the importance of hydrologic regimes to the phenology, demography, and abundance of fishes such as salmonids, there have been surprisingly few syntheses that holistically assess regional, species-specific trends in hydrologic regimes within a framework of climate change. Here, we consider hydrologic regimes within the Greater Yellowstone Area in the Rocky Mountains of western...
Authors
Robert K. Al-Chokhachy, Adam J. Sepulveda, Andrew M. Ray, David P. Thoma, Michael T. Tercek

Book review: Reptiles and amphibians: Self-assessment color review Book review: Reptiles and amphibians: Self-assessment color review

No abstract available. Book information: Reptiles and Amphibians: Self-Assessment Color Review. 2nd Edition. By Fredric L. Frye. CRC Press, Taylor and Francis Group, Boca Raton, Florida USA. 2015. 252 pp. ISBN 9781482257601.
Authors
David E. Green

Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata) Transcriptional response to West Nile virus infection in the zebra finch (Taeniopygia guttata)

West Nile virus (WNV) is a widespread arbovirus that imposes a significant cost to both human and wildlife health. WNV exists in a bird-mosquito transmission cycle in which passerine birds act as the primary reservoir host. As a public health concern, the mammalian immune response to WNV has been studied in detail. Little, however, is known about the avian immune response to WNV. Avian...
Authors
Daniel J. Newhouse, Erik K. Hofmeister, Christopher N. Balakrishnan

Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California

West Nile virus (WNV) was first detected in New York in 1999 and, during its expansion across the continental US, southern Canada, and Mexico, members of the Corvidae (ravens, crows, magpies, and jays) were frequently infected and highly susceptible to the virus. As part of a behavioral study of Steller's Jays (Cyanocitta stelleri) conducted from 2011–2014 in the coastal California...
Authors
Elena West, Erik K. Hofmeister, M. Zach Peery

Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses

We confirmed safety and immunogenicity of mass-produced vaccine baits carrying an experimental, commercial-source plague vaccine (RCN-F1/V307) expressing Yersinia pestis V and F1 antigens. Forty-five juvenile black-tailed prairie dogs (Cynomys ludovicianus) were randomly divided into three treatment groups (n=15 animals/group). Animals in the first group received one standard-dose...
Authors
Elsa M. Cardenas-Canales, Lisa L. Wolfe, Tripp. Daniel W., Tonie E. Rocke, Rachel C. Abbott, Michael W. Miller

Investigation of plastic debris ingestion by four species of sea turtles collected as bycatch in pelagic Pacific longline fisheries Investigation of plastic debris ingestion by four species of sea turtles collected as bycatch in pelagic Pacific longline fisheries

Ingestion of marine debris is an established threat to sea turtles. The amount, type, color and location of ingested plastics in the gastrointestinal tracts of 55 sea turtles from Pacific longline fisheries from 2012 to 2016 were quantified, and compared across species, turtle length, body condition, sex, capture location, season and year. Six approaches for quantifying amounts of...
Authors
Katherine E. Clukey, Christopher A. Lepczyk, George H. Balazs, Thierry M. Work, Jennifer M. Lynch

Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah

In November and December of 2013, a large mortality event involving 15,000 - 20,000 eared grebes (Podiceps nigricollis) occurred at the Great Salt Lake (GSL), UT. The onset of the outbreak in grebes was followed by a mortality event in > 86 bald eagles (Haliaeetus leucocephalus). During the die-off, West Nile virus (WNV) was detected by RT-PCR or viral culture in carcasses of grebes and...
Authors
Melissa Lund, Valerie I. Shearn-Bochsler, Robert J. Dusek, Jan Shivers, Erik K. Hofmeister

Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States

Pigeon paramyxovirus serotype 1 (PPMV-1) is a globally distributed, virulent member of the avian paramyxovirus serotype 1 serogroup that causes mortality in columbiformes and poultry. Following introduction into the United States in the mid-1980s, PPMV-1 rapidly spread causing numerous mortality events in Eurasian collared-doves (Streptopelia decaocto) (ECDOs) and rock pigeons (Columba...
Authors
Marcos Isidoro Ayza, C.L. Afonso, J.B. Stanton, Susan Knowles, S. Ip, C. LeAnn White, Heather Fenton, M.G. Ruder, A. C. Dolinski, Julia S. Lankton

Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange Lambdapapillomavirus 2 in a gray wolf (Canis lupus) from Minnesota with oral papillomatosis and sarcoptic mange

Oral papillomatosis was diagnosed in a gray wolf (Canis lupus) with sarcoptic mange from Minnesota, USA found dead in February 2015. Intranuclear inclusion bodies were evident histologically, and papillomaviral antigens were confirmed using immunohistochemistry. Sequencing of the L1 papillomavirus gene showed closest similarity to Lambdapapillomavirus 2.
Authors
Susan Knowles, Steve K. Windels, Marie Adams, Jeffrey S. Hall

Human infectious disease burdens decrease with urbanization but not with biodiversity Human infectious disease burdens decrease with urbanization but not with biodiversity

nfectious disease burdens vary from country to country and year to year due to ecological and economic drivers. Recently, Murray et al. (Murray CJ et al. 2012 Lancet 380, 2197–2223. (doi:10.1016/S0140-6736(12)61689-4)) estimated country-level morbidity and mortality associated with a variety of factors, including infectious diseases, for the years 1990 and 2010. Unlike other databases...
Authors
Chelsea L. Wood, Alex McInturff, Hillary S. Young, DoHyung Kim, Kevin D. Lafferty
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