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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Beyond exposure, sensitivity and adaptive capacity: A response based ecological framework to assess species climate change vulnerability Beyond exposure, sensitivity and adaptive capacity: A response based ecological framework to assess species climate change vulnerability

As the impacts of global climate change on species are increasingly evident, there is a clear need to adapt conservation efforts worldwide. Species vulnerability assessments (VAs) are increasingly used to summarize all relevant information to determine a species’ potential vulnerability to climate change and are frequently the first step in informing climate adaptation efforts. VAs...
Authors
Lucas B. Fortini, Olivia Schubert

Large wood and in-stream habitat for juvenile coho salmon and larval lampreys in a Pacific Northwest stream Large wood and in-stream habitat for juvenile coho salmon and larval lampreys in a Pacific Northwest stream

The influences of large wood on Pacific salmon are well-studied, but studies of nonsalmonid species such as lampreys are uncommon. To address this need, we evaluated the potential effects of large wood on larval lampreys (Pacific Lamprey, Entosphenus tridentatus; and potentially Western Brook Lamprey Lampetra richardsoni), as well as juvenile Coho Salmon Oncorhynchus kisutch, in a small...
Authors
Rosalinda Gonzalez, Jason B. Dunham, Scott W. Lightcap, Jeffery R. McEnroe

In some places, in some cases, and at some times, harmful algal blooms are the greatest threat to inland water quality In some places, in some cases, and at some times, harmful algal blooms are the greatest threat to inland water quality

No abstract available.
Authors
Bryan W. Brooks, James M. Lazorchak, Meredith D.A. Howard, Mari-Vaughn V. Johnson, Steve L. Morton, Dawn A.K. Perkins, Euan D. Reavie, Geoffrey L. Scott, Stephanie A. Smith, Jeffery A. Steevens

Patterns in Greater Sage-grouse population dynamics correspond with public grazing records at broad scales Patterns in Greater Sage-grouse population dynamics correspond with public grazing records at broad scales

Human land use, such as livestock grazing, can have profound yet varied effects on wildlife interacting within common ecosystems, yet our understanding of land-use effects is often generalized from short-term, local studies that may not correspond with trends at broader scales. Here we used public land records to characterize livestock grazing across Wyoming, USA, and we used Greater...
Authors
Adrian P. Monroe, Cameron L. Aldridge, Timothy J. Assal, Kari E. Veblen, David A. Pyke, Michael L. Casazza

Conservation challenges and research needs for Pacific lamprey in the Columbia River Basin Conservation challenges and research needs for Pacific lamprey in the Columbia River Basin

The Pacific Lamprey Entosphenus tridentatus, an anadromous fish native to the northern Pacific Ocean and bordering freshwater habitats, has recently experienced steep declines in abundance and range contractions along the West Coast of North America. During the early 1990s, Native American tribes recognized the declining numbers of lamprey and championed their importance. In 2012, 26...
Authors
Benjamin J. Clemens, Richard J. Beamish, Kelly C. Coates, Margaret F. Docker, Jason B. Dunham, Ann E. Gray, Jon E. Hess, Jeffrey C. Jolley, Ralph T. Lampman, Brian J. McIlraith, Mary L. Moser, Joshua G. Murauskas, David L. G. Noakes, Howard A. Schaller, Carl B. Schreck, Steven J. Starcevich, Bianca Streif, Stan J. van de Wetering, Joy Wade, Laurie A. Weitkamp, Lance A. Wyss

The relationship between female brooding and male nestling provisioning: does climate underlie geographic variation in sex roles? The relationship between female brooding and male nestling provisioning: does climate underlie geographic variation in sex roles?

Comparative studies of populations occupying different environments can provide insights into the ecological conditions affecting differences in parental strategies, including the relative contributions of males and females. Male and female parental strategies reflect the interplay between ecological conditions, the contributions of the social mate, and the needs of offspring. Climate is...
Authors
Jongmin Yoon, Helen Sofaer, T. Scott Sillett, Scott A. Morrison, Cameron K. Ghalambor

Analytical validation of a reverse transcriptase droplet digital PCR (RT-ddPCR) for quantitative detection of infectious hematopoietic necrosis virus Analytical validation of a reverse transcriptase droplet digital PCR (RT-ddPCR) for quantitative detection of infectious hematopoietic necrosis virus

Infectious hematopoietic necrosis virus (IHNV) is an important pathogen of salmonid fishes. A validated universal reverse transcriptase quantitative PCR (RT-qPCR) assay that can quantify levels of IHNV in fish tissues has been previously reported. In the present study, we adapted the published set of IHNV primers and probe for use in a reverse-transcriptase droplet digital PCR (RT-ddPCR)...
Authors
Peng Jia, Maureen K. Purcell, Guang Pan, Jinjin Wang, Shifu Kan, Yin Liu, Xiaocong Zheng, Xiujie SHi, Junqiang He, Li Yu, Qunyi Hua, Tikang Lu, Wensheng Lan, James Winton, Ningyi Jin, Hong Liu

Designing ecological climate change impact assessments to reflect key climatic drivers Designing ecological climate change impact assessments to reflect key climatic drivers

Identifying the climatic drivers of an ecological system is a key step in assessing its vulnerability to climate change. The climatic dimensions to which a species or system is most sensitive – such as means or extremes – can guide methodological decisions for projections of ecological impacts and vulnerabilities. However, scientific workflows for combining climate projections with...
Authors
Helen Sofaer, Joseph J. Barsugli, Catherine S. Jarnevich, John T. Abatzoglou, Marian Talbert, Brian W. Miller, Jeffrey T. Morisette

How do en route events around the Gulf of Mexico influence landbird populations How do en route events around the Gulf of Mexico influence landbird populations

Habitats around the Gulf of Mexico (GOM) provide critical resources for Nearctic–Neotropical migratory landbirds, the majority of which travel across or around the GOM every spring and fall as they migrate between temperate breeding grounds in North America and tropical wintering grounds in the Caribbean and Central and South America. At the same time, ecosystems in the GOM are changing...
Authors
Emily B. Cohen, Wylie C. Barrow, Jeffrey J. Buler, Jill L. Deppe, Andrew Farnsworth, Peter P. Marra, Scott R. McWilliams, David W Mehlman, R. Randy Wilson, Mark S Woodrey, Frank R. Moore

Accounting for sampling patterns reverses the relative importance of trade and climate for the global sharing of exotic plants Accounting for sampling patterns reverses the relative importance of trade and climate for the global sharing of exotic plants

Aim The distributions of exotic species reflect patterns of human-mediated dispersal, species climatic tolerances and a suite of other biotic and abiotic factors. The relative importance of each of these factors will shape how the spread of exotic species is affected by ongoing economic globalization and climate change. However, patterns of trade may be correlated with variation in...
Authors
Helen Sofaer, Catherine S. Jarnevich

A rapid diagnostic test and mobile "lab in a suitcase" platform for detecting Ceratocystis spp. responsible for Rapid ‘Ōhi‘a Death A rapid diagnostic test and mobile "lab in a suitcase" platform for detecting Ceratocystis spp. responsible for Rapid ‘Ōhi‘a Death

We describe a field compatible molecular diagnostic test for two new species of Ceratocystis that infect `ōhi`a (Metrosideros polymorpha) and cause the disease commonly known as Rapid `Ōhi`a Death. The diagnostic is based on amplification of a DNA locus within the internal transcribed spacer region that separates fungal 5.8S ribosomal genes. The assay uses forward and reverse primers...
Authors
Carter T. Atkinson, William Watcher-Weatherwax, Kylle Roy, Wade P Heller, Lisa Keith

Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission Developing an effective Agassiz's Desert Tortoise monitoring program: Final report to the Coachella Valley Conservation Commission

Agassiz’s desert tortoise (Gopherus agassizii) is a conservation-reliant species with populations north and west of the Colorado River protected as threatened under the Endangered Species Act (Averill-Murray et al. 2012). Since it was listed under this category in 1990, a great deal has been learned about the natural history of the species, and it is now one of the best-studied turtles...
Authors
Jeffrey E. Lovich, Shellie R. Puffer
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