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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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The impacts of co-circulating pathogens in Pacific herring depend on interactions between viral life-cycle traits and transmission parameters, highlighting interdependencies between pathogen epizootics The impacts of co-circulating pathogens in Pacific herring depend on interactions between viral life-cycle traits and transmission parameters, highlighting interdependencies between pathogen epizootics

The average host susceptibility decreases as the epizootic progresses because easily infected hosts are first removed from the population. While host susceptibility is pathogen-specific, it is likely that host susceptibility is correlated between different pathogens, so that co-circulating pathogens may have reciprocal impacts on their epidemics. However, despite well-documented examples...
Authors
David James Páez, Courtney Ann Grady, Jacob L. Gregg, William N. Batts, Shayla Ferreiro-Luce, V. L. Herron, Malina Mariko Loeher, Sarah Williamson, Paul Hershberger

Comparison of nonlethal techniques as indicators of lipid content in Lake Whitefish Comparison of nonlethal techniques as indicators of lipid content in Lake Whitefish

Objective Energetic reserves are important indicators of the relative health of fish and fish populations. Body condition indices that relate fish weight to length are commonly used as quick, noninvasive methods for approximating lipid content and condition. A microwave meter (i.e., fat meter or energy meter) is a noninvasive method found to be more accurate in some species. The...
Authors
Tyler Reid Funnell, Jenus Shrestha, Rachel R. Leads, Christopher M. Holbrook, Koji Sano, Cheryl A. Murphy

Region-specific understanding of virus transmission to support salmonid health at hatcheries in three regions of the Pacific Northwest, North America Region-specific understanding of virus transmission to support salmonid health at hatcheries in three regions of the Pacific Northwest, North America

Juvenile salmonid mortality due to infectious haematopoietic necrosis virus (IHNV) can be a major burden on fish hatcheries. We consider possible IHNV transmission routes and specialist–generalist patterns across three regions in the Pacific Northwest of North America: Coastal Washington and Oregon (CWO), Lower Columbia River Basin (LCRB) and Snake River Basin (SRB) to obtain multi...
Authors
Jeffrey P. Mattheiss, Rachel B. Breyta, Gael Kurath, Shannon L. LaDeau, David James Páez, Paige F.B. Ferguson

From understanding to action: Integrating new and old methodologies to manage marine infectious disease From understanding to action: Integrating new and old methodologies to manage marine infectious disease

Marine diseases can have far-reaching effects on population, community and ecosystem health; however, our ability to track, predict and manage these diseases has, historically, been poor. As a result, the fields of disease ecology and epidemiology have developed at a slower pace for marine than terrestrial systems [1]. New methodologies, including genomic tools for diagnostics [2,3]
Authors
Maya L. Groner, David James Páez, Alyssa-Lois M. Gehman

Groundwater dependency and hydroclimatic influences on riparian and upland vegetation productivity, Upper San Pedro, Arizona, United States Groundwater dependency and hydroclimatic influences on riparian and upland vegetation productivity, Upper San Pedro, Arizona, United States

In arid and semi-arid regions, groundwater sustains vegetation through subsurface water access, yet the responses of groundwater-dependent ecosystems (GDEs) to changing hydroclimate and groundwater availability are relatively understudied. This study investigates seasonal and spatial patterns in vegetation greenness using Landsat Enhanced Vegetation Index (EVI) values across riparian and...
Authors
Fern Bromley, Patrick Borxton, Jiaqi Zhang, Willem J.D. van Leeuwen, Pamela L. Nagler, Jia Hu

Changing drivers of regional large magnitude avalanche frequency throughout Colorado, USA Changing drivers of regional large magnitude avalanche frequency throughout Colorado, USA

Large magnitude snow avalanches (destructive size ≥ D3) impact settlements, transportation corridors, and public safety worldwide. In Colorado, United States, avalanches have killed more people than any other natural hazard since 1950. In March 2019, a large magnitude avalanche cycle occurred throughout the entire mountainous portion of Colorado resulting in more than 1000 reported...
Authors
Erich H. Peitzsch, Justin T. Martin, Ethan M. Greene, Nicolas Eckert, Adrien Favillier, Jason Konigsberg, Nickolas Kichas, Daniel K. Stahle, Karl W. Birkeland, Kelly Elder, Gregory T. Pederson

The USGS Rotating X-ray Computed Tomography (RXCT) Coral-Core Archive: Scope, access, and standardization The USGS Rotating X-ray Computed Tomography (RXCT) Coral-Core Archive: Scope, access, and standardization

We announce the U.S. Geological Survey (USGS) Rotating X-ray Computed Tomography (RXCT) Coral-Core Archive, a digital resource derived from ~400 coral reef cores curated at the USGS Pacific and St. Petersburg Coastal and Marine Science Centers. The archive de-livers calibrated 3-D image volumes that enable reproducible values of skeletal density, linear extension, and calcification from...
Authors
Ferdinand K.J. Oberle, Lauren T. Toth, Nancy G. Prouty, Brooke Santos, Jessica A. Jacobs, Sierra Kathleen Bloomer, Kian Bagheri, Breanna N Williams, Jason Scott Padgett, Anastasios Stathakopoulos, SeanPaul La Selle

Detection of Naegleria fowleri in thermally impacted recreational waters of western United States national parks Detection of Naegleria fowleri in thermally impacted recreational waters of western United States national parks

Naegleria fowleri is a thermophilic free-living amoeba (FLA) and the causative agent of primary amoebic meningoencephalitis, posing public health risks in warm freshwater environments. This multiyear, multiagency study surveyed 40 thermally impacted recreational waters across five western United States national parks and recreation areas–Yellowstone National Park, Grand Teton National...
Authors
Jonathan I. Shikany, Mia M. Banks, Elliott P. Barnhart, Stacy Kinsey, Peter R. Wright, Stacie A. Kageyama, Christopher M. Merkes, Natalia Kulesza, Jason Wylie, Sandra Halonen, Ana M. Ortega-Villa, Carrie M. Long, Brent M. Peyton, Geoffrey Puzon

Efficacy of increased visual and olfactory cues for luring and trapping invasive tegu lizards Efficacy of increased visual and olfactory cues for luring and trapping invasive tegu lizards

Controlling invasive wildlife species relies on the ability to efficiently remove individuals from the invaded environment. Thus, maximizing capture potential is of high interest, particularly for species that are difficult to capture. For invasive species such as the Argentine black and white tegu lizard (Salvator merianae), increasing attraction to traps could increase the probability...
Authors
Amanda Marie Kissel, Kevin L. Donmoyer, Mark Robert Sandfoss, James C. Howard, Christina M. Romagosa, Amy A. Yackel Adams

Brewing change in the (glacier) percolation zone Brewing change in the (glacier) percolation zone

Alaska's glaciers are losing mass at the fastest rate of any region globally, significantly affecting both the volume and distribution of water across the landscape. Though glaciers in the Alaska region (as defined by glaciologists this includes both Alaska and portions of adjacent Canada) range from sea level to nearly 6200 m (20,320 ft), the majority of glacier area in the Alaska...
Authors
Louis Sass, Christopher McNeil, Emily A. Baker, Zanden Arthur Frederick, Michael Loso

Understanding flooding and channel dynamics along the Taiya River: Providing context for resource management Understanding flooding and channel dynamics along the Taiya River: Providing context for resource management

Flooding and channel change in the Taiya River Basin in recent decades have directly affected park infrastructure and cultural resources. The complexities of flooding and channel change are compounded by the changing sediment and flow regime from a changing climate and shrinking glaciers, which will continue to drive dynamic riverine change. Streamflow data and geomorphic interpretation...
Authors
Janet H. Curran

Exploring how Dolly Varden in Arctic streams respond to changes from permafrost thaw Exploring how Dolly Varden in Arctic streams respond to changes from permafrost thaw

The influence of permafrost thaw on aquatic ecosystems is complex. Carbon, nutrients, and metals in stream discharge result in changing stream color, chemistry, and temperature. These different processes create a mosaic of spatially and temporally dynamic disturbances across the landscape with complex effects on the ecology.
Authors
Michael P. Carey, Jonathan A. O’Donnell, Joshua C. Koch, Kenneth Hill, Brett Poulin
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