Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
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A genomic hotspot of diversifying selection and structural change in the hoary bat (Lasiurus cinereus) A genomic hotspot of diversifying selection and structural change in the hoary bat (Lasiurus cinereus)
Background Previous work found that numerous genes positively selected within the hoary bat (Lasiurus cinereus) lineage are physically clustered in regions of conserved synteny. Here I further validate and expand on those finding utilizing an updated L. cinereus genome assembly and additional bat species as well as other tetrapod outgroups.Methods A chromosome-level assembly was...
Authors
Robert S. Cornman
Broad-scale changes in lesser prairie-chicken habitat Broad-scale changes in lesser prairie-chicken habitat
Lesser prairie-chicken (Tympanuchus pallidicinctus) populations of in the Sand Sagebrush Prairie Ecoregion of southwest Kansas and southeast Colorado, USA, have declined sharply since the mid-1980s. Decreased quality and availability of habitat are believed to be the main drivers of declines. Our objective was to reconstruct broad-scale change in the ecoregion since 1985 as a potential...
Authors
Megan P. Vhay, David A. Haukos, Daniel S. Sullins, Mindy B. Rice
Towards entity-aware conditional variational inference for heterogeneous time-series prediction: An application to hydrology Towards entity-aware conditional variational inference for heterogeneous time-series prediction: An application to hydrology
Many environmental systems (e.g., hydrology basins) can be modeled as entity whose response (e.g., streamflow) depends on drivers (e.g., weather) conditioned on their characteristics (e.g., soil properties). We introduce Entity-aware Conditional Variational Inference (EA-CVI), a novel probabilistic inverse modeling approach, to deduce entity characteristics from observed driver-response...
Authors
Rahul Ghosh, Wallace Mcaliley, Arvind Renganathan, Michael Steinbach, Christopher Duffy, Vipin Kumar
Simulated effects of projected 2014–40 withdrawals on groundwater flow and water levels in the New Jersey Coastal Plain Simulated effects of projected 2014–40 withdrawals on groundwater flow and water levels in the New Jersey Coastal Plain
Abstract Groundwater flow between 2014 through 2040 was simulated in the New Jersey Coastal Plain based on three withdrawal scenarios. Two of the scenarios were based on projected population trends and the assumption of water conservation; the nominal water-loss scenario projected a status quo in the efficiency of water loss in the delivery systems whereas the optimal water-loss scenario...
Authors
Leon J. Kauffman
Stratigraphy, paleoflora, and tectonic setting of the Paleogene Sheep Creek volcanic field, central Alaska Stratigraphy, paleoflora, and tectonic setting of the Paleogene Sheep Creek volcanic field, central Alaska
In this paper, we provide new information on the stratigraphy and paleoflora of the Sheep Creek volcanic field in the Alaska Range that bolsters our understanding of a key interval in the tectonic, paleoclimate, and paleoenvironmental history of the northern Cordillera. Although the distribution and basic stratigraphy of these rocks have been previously reported, here we document the...
Authors
Timothy White, David Sunderlin, Dwight Bradley
Deep vs shallow: GPS tags reveal a dichotomy in movement patterns of loggerhead turtles foraging in a coastal bay Deep vs shallow: GPS tags reveal a dichotomy in movement patterns of loggerhead turtles foraging in a coastal bay
Background Individual variation in movement strategies of foraging loggerhead turtles have been documented on the scale of tens to hundreds of kilometers within single ocean basins. Use of different strategies among individuals may reflect variations in resources, predation pressure or competition. It is less common for individual turtles to use different foraging strategies on the scale...
Authors
Margaret Lamont, Daniel Slone, James P. Reid, Susan M. Butler, Joseph A. Alday
Fire effects on geomorphic processes Fire effects on geomorphic processes
Fire-induced geomorphic changes, such as enhanced erosion and debris-flow activity, are expected to increase with climate change owing to increases in fire activity and rainfall intensification. In this Review, we summarize how landscape attributes, rainfall and burn severity influence post-fire geomorphic responses over a range of temporal and spatial scales. Sub-hourly rainfall...
Authors
Luke McGuire, Brian A. Ebel, Francis K. Rengers, Diana Vieira, Petter Nyman
Characterizing sulfur redox state and geochemical implications in deep-time using mineral chemistry network analysis Characterizing sulfur redox state and geochemical implications in deep-time using mineral chemistry network analysis
Sulfur (S) is a central element in global biogeochemical cycling and Earth’s redox evolution. Minerals that contain S are an important record of local environmental conditions at the time of their formation based on chemical speciation and redox. However, the oxidation state of S for hundreds of different S-containing minerals and thousands of S-containing mineral localities is unknown...
Authors
Elisha Kelly Moore, Joseph Diedolf, Shaunna M. Morrison, Daniel Hummer
Formation and evolution of the Pacific-North American (San Andreas) plate boundary: Constraints from the crustal architecture of northern California Formation and evolution of the Pacific-North American (San Andreas) plate boundary: Constraints from the crustal architecture of northern California
The northward migration of the Mendocino triple junction (MTJ) drives a fundamental plate boundary transformation from convergence to translation; producing a series of strike-slip faults, that become the San Andreas plate boundary. We find that the 3-D structure of the Pacific plate lithosphere in the vicinity of the MTJ controls the location of San Andreas plate boundary formation. At...
Authors
Kevin P. Furlong, Antonio Villasenor, Harley M. Benz, Kirsty A. McKenzie
Effects of telemetry collars on two free-roaming feral equid species Effects of telemetry collars on two free-roaming feral equid species
There are two species of free-roaming feral equids in North America: horses (Equus caballus) and donkeys or “burros” (E. asinus). Both species were introduced as domestic animals to North America in the early 1500s and currently inhabit rangelands across the western United States, Canada, and all continents except Antarctica. Despite their global distribution, little is known about their...
Authors
Kathryn A. Schoenecker, Sarah King, Jacob D. Hennig, Mary C. Cole, J. Derek Scasta, Jeffrey L. Beck
Human activities shape global patterns of decomposition rates in rivers Human activities shape global patterns of decomposition rates in rivers
Rivers and streams contribute to global carbon cycling by decomposing immense quantities of terrestrial plant matter. However, decomposition rates are highly variable and large-scale patterns and drivers of this process remain poorly understood. Using a cellulose-based assay to reflect the primary constituent of plant detritus, we generated a predictive model (81% variance explained) for...
Authors
Scott Tiegs, Krista A. Capps, David M. Costello, John Paul Schmidt, Christopher J. Patrick, Jennifer Follstad Shah, Carri J. LeRoy, Vicenc Acuna, Ricardo Albarino, Daniel C. Allen, Cecilia Alonso, Patricio Andino, Clay Arango, Jukka Aroviita, Marcus Barbosa, Leon A. Barmuta, Colden V. Baxter, Brent Bellinger, Luz Boyero, Lyubov Bragina, Lee E. Brown, Andreas Bruder, Denise Bruesewitz, Francis Burdon, Marcos Callisto, Antonio G. Camacho, Cristina Canhoto, Maria Castillo, Eric Chauvet, Joanne Clapcott, Fanny Colas, Checo Colon-Gaud, Julien Cornut, Veronica Crespo-Perez, Wyatt F. Cross, Joseph M. Culp, Michael Danger, Olivier Dangles, Elvira de Eyto, Alison Derry, Veronica Diaz-Villanueva, Michael Douglas, Arturo Elosegi, Andrea Encalada, Sally Entrekin, Rodrigo Espinosa, Veronica Ferreira, Carmen Ferriol, Kyla Flanagan, Alexander Flecker, Tadeusz Fleituch, André Frainer, Nikolai Friberg, Paul C. Frost, Erica A. Garcia, Liliana Garcia-Lago, Pavel Garcia Soto, Mark Gessner, Sudeep Ghate, Darren Giling, Alan Gilmer, Jose Goncalves, Rosario Gonzales, Manuel Graca, Mike Grace, Natalie A. Griffiths, Hans-Peter Grossart, Francois Guerold, Vlad Gulis, Pablo E. Gutiérrez-Fonseca, Luiz Hepp, Scott Higgins, Takuo Hishi, Joseph Huddart, John P. Hudson, Moss Imberger, Carlos Iniguez-Armijos, Mark Isken, Tomoya Iwata, Dave Janetski, Andrea Kirkwood, Aaron A. Koning, Sarian Kosten, Kevin Kuehn, Hjalmar Laudon, Peter Leavitt, Aurea Lemes da Silva, Shawn Leroux, Peter Lisi, Richard Mackenzie, Amy M Marcarelli, Frank Masese, Peter B. McIntyre, Brendan G. McKie, Adriana Medeiros, Kristian Meissner, Marko Milisa, Shailendra Mishra, Yo Miyake, Ashley Moerke, Shorok Mombrikotb, Robert J Mooney, Tim Moulton, Timo Muotka, Junjiro N. Negishi, Vinicius Neres-Lima, Mika Nieminen, Jorge Nimptsch, Jakub Ondruch, Riku Paavola, Isabel Pardo, Edwin Peeters, Jesus Pozo, Aaron Prussian, Estefania Quenta, Brian Reid, John S. Richardson, Anna Rigosi, Jose Rincon, Geta Risnoveanu, Chris Robinson, Lorena Rodriguez-Gallego, Todd V Royer, James A. Rusak, Anna Santamans, Geza Selmeczy, Gelas Simiyu, Agnija Skuja, Jerzy Smykla, Ryan A. Sponseller, Kandikere Sridhar, Aaron Stoler, Christopher M. Swan, Franco Teixeira-de Mello, Jonathan Tonkin, Sari Uusheimo, Allison Veach, Sirje Vilbaste, Lena Vought, Chiao-Ping Wang, Jackson Webster, Paul B. Wilson, Stefan Woelfl, Guy Woodward, Marguerite A. Xenopoulos, Adam Yates, Chihiro Yoshimura, Catherine Yule, Yixin Zhang, Jacob Aaron Zwart
Evaluating satellite-transmitter backpack-harness effects on greater sage-grouse survival and device retention in the Great Basin Evaluating satellite-transmitter backpack-harness effects on greater sage-grouse survival and device retention in the Great Basin
Wildlife tracking studies have become ubiquitous in ecology and now provide previously unobtainable data regarding individual movement, vital rates, and population demographics. However, tracking devices can potentially reduce survival of study subjects, generating biases in the vital rates they seek to measure. Previous studies have found that greater sage-grouse (Centrocercus...
Authors
Carl G. Lundblad, Christopher R. Anthony, Tyler Dungannon, Kimberly A. Haab, Elizabeth M. Schuyler, Chelsea E. Sink, Katie Dugger, Christian A. Hagen