John Clune is a Research Hydrologist who has worked at the Pennsylvania Water Science Center since 2007.
John Clune conducts studies on
- environmental drivers and responses of nutrients and sediment in streams with an emphasis on the effectiveness of conservation practices, and
- geochemistry of groundwater focusing on quality of drinking water for the protection of public health.
Professional Experience
Adjunct professor for stream ecology at York College, Pennsylvania.
Provided research for the National Park Service (Grand Teton), US Army Corps of Engineers, University of Pittsburgh, Queens University Belfast, UTC Pratt and Whitney, and Lackawanna Conservation District.
Education and Certifications
Ph.D. Forest Resources, 2021, Penn State University
Dissertation: Toward Development of Nutrient Criteria for Streams of PennsylvaniaM.S. Biology, 2008, East Stroudsburg University
Thesis: Nutrient Supply Rates Relationships for Primary Production of Shallow Streams in the Mid-Atlantic StatesB.S. Civil Engineering, 2000, University of Pittsburgh
Science and Products
USGS Chesapeake Publication Receives National Award for Superior Communication Product
The Award USGS received a 2022 Blue Pencil & Gold Screen Award, in the category of Technical/Statistical Reports, from the National Association of Government Communications (NAGC) for the U.S. Geological Survey Circular titled Nitrogen in the Chesapeake Bay Watershed—A Century of Change, 1950–2050. Each year the NAGC recognizes products that provide excellence in government communications and the...
Tracking Status and Trends in Seven Key Indicators of River and Stream Condition in the Chesapeake Bay Watershed
Identifying and tracking the status of, and trends in, stream health within the Chesapeake Bay watershed is essential to understanding the past, present, and future trajectory of the watershed’s resources and ecological condition. A team of USGS ecosystem scientists is meeting this need with an initiative to track the status of, and trends in, key indicators of the health of non-tidal freshwater...
Susquehanna River and Basin
In Pennsylvania, the USGS's water-resources roots date back to the late 1800's, with the initiation of streamflow gaging on the Susquehanna and Delaware Rivers and assessments of groundwater resources near Philadelphia. The USGS Pennsylvania Water Science Center continues to provide scientific information about the water resources of the Susquehanna River Basin, in cooperation with regional and...
Pennsylvania and the Chesapeake Bay Watershed
USGS provides monitoring, analysis, modeling and research on streams and water quality to better understand the fate and transport of nutrients and sediment to the Susquehanna and other rivers, and their tributaries, and eventually to the Chesapeake Bay. Additional research focuses on emerging contaminants and other stressors that effect human and aquatic life in the watershed and estuary.
Greatest Opportunities for Future Nitrogen Reductions to the Chesapeake Bay Watershed are in Developed and Agricultural Areas
Issue: As human population has increased, land-use changes have led to increases in nutrients (nitrogen and phosphorus) and sediment into the Bay. The excess nutrients cause algal blooms which contribute to water-quality impairments such as low oxygen or hypoxia (dead zones), and poor water clarity in the Chesapeake Bay. Management efforts to improve water quality focus on dissolved oxygen needed...
Regional Synthesis of Groundwater Quality in Domestic Supply Wells in Northeast and North Central Pennsylvania
USGS synthesized groundwater quality measurements in wells to characterize regional chemical characteristics of aquifers used for domestic supply in northeast and north central Pennsylvania.
Summarizing Scientific Findings for Common Stakeholder Questions to Inform Nutrient and Sediment Management Activities in the Chesapeake Bay Watershed
Issue: The Chesapeake Bay Program (CBP) partnership is striving to improve water-quality conditions in the Bay by using a variety of management strategies to reduce nutrient and sediment loads. The partnership uses monitoring results and modeling tools to implement management strategies, relying on the scientific community to synthesize existing information and direct new research to address...
Sediment Response of Stream Restoration Practices, Turtle Creek, Union County, Pennsylvania
USGS is providing data and analyses to assess stream restoration effectiveness in Turtle Creek, Union County, Pennsylvania, by measuring differences in sediment erosion and deposition in restored and eroded stream reaches.
Water Quality Monitoring to Inform Conservation Management, Fishing Creek, Clinton County, Pennsylvania
USGS conducted synoptic sampling of major-ion chemistry and the nitrogen and oxygen isotopic composition of nitrate in Fishing Creek during base flow to evaluate the occurrence and distribution of nutrients and to characterize biogeochemical processes.
Groundwater Quality of Domestic Supply Wells in Pennsylvania
Most rural residents in Pennsylvania use groundwater from domestic supply wells for drinking, cleaning and other purposes. Some groundwater samples have been analyzed for private purposes, but those results generally are not readily available to the public. Many of the publicly available water-quality samples from rural areas were collected more than 30 years ago. Quality-assured groundwater...
Sediment and Stream Health - Pennsylvania
Sediment in streams, from land surface erosion in watersheds, is an important factor in determining the quality of Pennsylvania's surface waters and of downstream water bodies such as the Delaware Estuary and Chesapeake Bay. The USGS has a long-standing tradition of measuring suspended-sediment concentrations and estimating loads. Recent technological advances allow real-time estimates of...
Science and Products
- Publications
- Science
USGS Chesapeake Publication Receives National Award for Superior Communication Product
The Award USGS received a 2022 Blue Pencil & Gold Screen Award, in the category of Technical/Statistical Reports, from the National Association of Government Communications (NAGC) for the U.S. Geological Survey Circular titled Nitrogen in the Chesapeake Bay Watershed—A Century of Change, 1950–2050. Each year the NAGC recognizes products that provide excellence in government communications and the...Tracking Status and Trends in Seven Key Indicators of River and Stream Condition in the Chesapeake Bay Watershed
Identifying and tracking the status of, and trends in, stream health within the Chesapeake Bay watershed is essential to understanding the past, present, and future trajectory of the watershed’s resources and ecological condition. A team of USGS ecosystem scientists is meeting this need with an initiative to track the status of, and trends in, key indicators of the health of non-tidal freshwater...Susquehanna River and Basin
In Pennsylvania, the USGS's water-resources roots date back to the late 1800's, with the initiation of streamflow gaging on the Susquehanna and Delaware Rivers and assessments of groundwater resources near Philadelphia. The USGS Pennsylvania Water Science Center continues to provide scientific information about the water resources of the Susquehanna River Basin, in cooperation with regional and...Pennsylvania and the Chesapeake Bay Watershed
USGS provides monitoring, analysis, modeling and research on streams and water quality to better understand the fate and transport of nutrients and sediment to the Susquehanna and other rivers, and their tributaries, and eventually to the Chesapeake Bay. Additional research focuses on emerging contaminants and other stressors that effect human and aquatic life in the watershed and estuary.Greatest Opportunities for Future Nitrogen Reductions to the Chesapeake Bay Watershed are in Developed and Agricultural Areas
Issue: As human population has increased, land-use changes have led to increases in nutrients (nitrogen and phosphorus) and sediment into the Bay. The excess nutrients cause algal blooms which contribute to water-quality impairments such as low oxygen or hypoxia (dead zones), and poor water clarity in the Chesapeake Bay. Management efforts to improve water quality focus on dissolved oxygen needed...Regional Synthesis of Groundwater Quality in Domestic Supply Wells in Northeast and North Central Pennsylvania
USGS synthesized groundwater quality measurements in wells to characterize regional chemical characteristics of aquifers used for domestic supply in northeast and north central Pennsylvania.Summarizing Scientific Findings for Common Stakeholder Questions to Inform Nutrient and Sediment Management Activities in the Chesapeake Bay Watershed
Issue: The Chesapeake Bay Program (CBP) partnership is striving to improve water-quality conditions in the Bay by using a variety of management strategies to reduce nutrient and sediment loads. The partnership uses monitoring results and modeling tools to implement management strategies, relying on the scientific community to synthesize existing information and direct new research to address...Sediment Response of Stream Restoration Practices, Turtle Creek, Union County, Pennsylvania
USGS is providing data and analyses to assess stream restoration effectiveness in Turtle Creek, Union County, Pennsylvania, by measuring differences in sediment erosion and deposition in restored and eroded stream reaches.Water Quality Monitoring to Inform Conservation Management, Fishing Creek, Clinton County, Pennsylvania
USGS conducted synoptic sampling of major-ion chemistry and the nitrogen and oxygen isotopic composition of nitrate in Fishing Creek during base flow to evaluate the occurrence and distribution of nutrients and to characterize biogeochemical processes.Groundwater Quality of Domestic Supply Wells in Pennsylvania
Most rural residents in Pennsylvania use groundwater from domestic supply wells for drinking, cleaning and other purposes. Some groundwater samples have been analyzed for private purposes, but those results generally are not readily available to the public. Many of the publicly available water-quality samples from rural areas were collected more than 30 years ago. Quality-assured groundwater...Sediment and Stream Health - Pennsylvania
Sediment in streams, from land surface erosion in watersheds, is an important factor in determining the quality of Pennsylvania's surface waters and of downstream water bodies such as the Delaware Estuary and Chesapeake Bay. The USGS has a long-standing tradition of measuring suspended-sediment concentrations and estimating loads. Recent technological advances allow real-time estimates of... - Data
- Multimedia