Matthew Neilson, Ph.D.
My interests lie in the ecology, biology, systematics, population genetics, and zoogeography of fishes. I currently work with the USGS Nonindigenous Aquatic Species Database program helping to refine our understanding of nonnative fish distributions and impacts in the United States.
Science and Products
Filter Total Items: 14
Integration of Environmental DNA (eDNA) Data into the USGS Nonindigenous Aquatic Species Database
USGS and Department of the Interior partners have added a new, advanced capability to the early detection and rapid response tool set – the integration of environmental DNA and sighting data in the USGS Nonindigenous Aquatic Species database.
AquaDePTH-Aquatic Disease and Pathogen Repository
The Aquatic Disease and Pathogen Repository (AquaDePTH) will be a public-facing national repository to support biosurveillance of aquatic animal diseases and pathogens. By collating historically published data, plus new aquatic pathogen and disease information, stakeholders will be able monitor fish kill and aquatic pathogen trends spatially and temporally in freshwater and marine environments...
READI-Net: Providing Tools for the Early Detection and Management of Aquatic Invasive Species
The USGS has developed the Rapid environmental (e)DNA Assessment and Deployment Initiative & Network (READI-Net) to accelerate the implementation of environmental DNA (eDNA) analysis as a best practice for the early detection of aquatic biological threats. READI-Net provides tools and a strategy to collect and deliver early detection data for natural resource managers and public health protection...
By
Ecosystems Mission Area, Biological Threats and Invasive Species Research Program, Columbia Environmental Research Center, Eastern Ecological Science Center, Forest and Rangeland Ecosystem Science Center, New York Water Science Center, Northern Rocky Mountain Science Center, Upper Midwest Environmental Sciences Center, Wetland and Aquatic Research Center , Wyoming-Montana Water Science Center, Pacific Northwest Environmental DNA Laboratory, Infrastructure Investment Jobs Act
Implementing FAIR practices: Storing and displaying eDNA data in the USGS Nonindigenous Aquatic Species database
We are working to incorporate environmental DNA (eDNA) data into the Nonindigenous Aquatic Species (NAS) database, which houses over 570,000 records of nonindigenous species nationally, and already is used by a broad user-base of managers and researchers regularly for invasive species monitoring. eDNA studies have allowed for the identification and biosurveillance of numerous invasive...
Establishing standards and integrating environmental DNA (eDNA) data into the USGS Nonindigenous Aquatic Species database
Environmental DNA (eDNA) testing allows for high sensitivity monitoring efforts of cryptic species in large, remote systems and is performed by investigating water and soil samples for sloughed DNA. Having access to eDNA datasets across multiple taxa and ecosystems is necessary for improved coordination among researchers and management. Additionally, quality control protocols are needed...
National Public Screening Tool for Invasive and Non-native Aquatic Species Data
Identifying the leading edge of a biological invasion can be difficult. Many management and research entities have biological samples or surveys that may unknowingly contain data on nonindigenous species. The new Nonindigenous Aquatic Species (NAS) Database automated online tool “SEINeD” (Screen and Evaluate Invasive and Non-native Data) will allow a user to search for these...
The Nonindigenous Aquatic Species Alert Risk Mapper (ARM)
The Nonindigenous Aquatic Species (NAS) program has developed a new tool, the NAS Alert Risk Mapper (ARM), to characterize waterbodies in the conterminous U.S. and Hawaii at potential risk of invasion from a new nonindigenous species sighting.
Defining Native Ranges of U.S. Inland Fishes
Understanding the native versus non-native range of a species can provide useful information about dispersal, population distribution patterns, and human mediated movement across hydrologic barriers. The USGS Nonindigenous Aquatic Species (NAS) Program is working with partners to define native ranges of inland fishes in the United States to help identify which species should be included in the NAS...
The Nonindigenous Aquatic Species Flood and Storm Tracker (FaST)
Storm-related flooding can lead to the potential spread of nonindigenous (or non-native) aquatic species into waterways they have not been seen in before. The USGS Nonindigenous Aquatic Species program has developed an innovative mapping tool to help natural resource managers with post-storm nonindigenous aquatic species detection and assessment efforts.
Knowledge Extraction Algorithms (KEA): Turning Literature Into Data
Identifying, extracting, and mobilizing information from current and historical literature is a time-consuming part of organizing and collating synthetic data productions. This project explored the use of algorithm-based methods to identify and extract occurrence information from the GeoDeepDive (GDD) literature database to support upkeep of the Nonindigenous Aquatic Species (NAS) data...
National Alert Risk Mapper for Nonindigenous Aquatic Species
The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and...
Great Lakes Aquatic Nuisance Species Information System
The Great Lakes Aquatic Nuisance Species Information System (GLANSIS) was developed by the NOAA Great Lakes Science Center to monitor nonindigenous aquatic species introductions into the Great Lakes region.
Science and Products
Filter Total Items: 14
Integration of Environmental DNA (eDNA) Data into the USGS Nonindigenous Aquatic Species Database
USGS and Department of the Interior partners have added a new, advanced capability to the early detection and rapid response tool set – the integration of environmental DNA and sighting data in the USGS Nonindigenous Aquatic Species database.
AquaDePTH-Aquatic Disease and Pathogen Repository
The Aquatic Disease and Pathogen Repository (AquaDePTH) will be a public-facing national repository to support biosurveillance of aquatic animal diseases and pathogens. By collating historically published data, plus new aquatic pathogen and disease information, stakeholders will be able monitor fish kill and aquatic pathogen trends spatially and temporally in freshwater and marine environments...
READI-Net: Providing Tools for the Early Detection and Management of Aquatic Invasive Species
The USGS has developed the Rapid environmental (e)DNA Assessment and Deployment Initiative & Network (READI-Net) to accelerate the implementation of environmental DNA (eDNA) analysis as a best practice for the early detection of aquatic biological threats. READI-Net provides tools and a strategy to collect and deliver early detection data for natural resource managers and public health protection...
By
Ecosystems Mission Area, Biological Threats and Invasive Species Research Program, Columbia Environmental Research Center, Eastern Ecological Science Center, Forest and Rangeland Ecosystem Science Center, New York Water Science Center, Northern Rocky Mountain Science Center, Upper Midwest Environmental Sciences Center, Wetland and Aquatic Research Center , Wyoming-Montana Water Science Center, Pacific Northwest Environmental DNA Laboratory, Infrastructure Investment Jobs Act
Implementing FAIR practices: Storing and displaying eDNA data in the USGS Nonindigenous Aquatic Species database
We are working to incorporate environmental DNA (eDNA) data into the Nonindigenous Aquatic Species (NAS) database, which houses over 570,000 records of nonindigenous species nationally, and already is used by a broad user-base of managers and researchers regularly for invasive species monitoring. eDNA studies have allowed for the identification and biosurveillance of numerous invasive...
Establishing standards and integrating environmental DNA (eDNA) data into the USGS Nonindigenous Aquatic Species database
Environmental DNA (eDNA) testing allows for high sensitivity monitoring efforts of cryptic species in large, remote systems and is performed by investigating water and soil samples for sloughed DNA. Having access to eDNA datasets across multiple taxa and ecosystems is necessary for improved coordination among researchers and management. Additionally, quality control protocols are needed...
National Public Screening Tool for Invasive and Non-native Aquatic Species Data
Identifying the leading edge of a biological invasion can be difficult. Many management and research entities have biological samples or surveys that may unknowingly contain data on nonindigenous species. The new Nonindigenous Aquatic Species (NAS) Database automated online tool “SEINeD” (Screen and Evaluate Invasive and Non-native Data) will allow a user to search for these...
The Nonindigenous Aquatic Species Alert Risk Mapper (ARM)
The Nonindigenous Aquatic Species (NAS) program has developed a new tool, the NAS Alert Risk Mapper (ARM), to characterize waterbodies in the conterminous U.S. and Hawaii at potential risk of invasion from a new nonindigenous species sighting.
Defining Native Ranges of U.S. Inland Fishes
Understanding the native versus non-native range of a species can provide useful information about dispersal, population distribution patterns, and human mediated movement across hydrologic barriers. The USGS Nonindigenous Aquatic Species (NAS) Program is working with partners to define native ranges of inland fishes in the United States to help identify which species should be included in the NAS...
The Nonindigenous Aquatic Species Flood and Storm Tracker (FaST)
Storm-related flooding can lead to the potential spread of nonindigenous (or non-native) aquatic species into waterways they have not been seen in before. The USGS Nonindigenous Aquatic Species program has developed an innovative mapping tool to help natural resource managers with post-storm nonindigenous aquatic species detection and assessment efforts.
Knowledge Extraction Algorithms (KEA): Turning Literature Into Data
Identifying, extracting, and mobilizing information from current and historical literature is a time-consuming part of organizing and collating synthetic data productions. This project explored the use of algorithm-based methods to identify and extract occurrence information from the GeoDeepDive (GDD) literature database to support upkeep of the Nonindigenous Aquatic Species (NAS) data...
National Alert Risk Mapper for Nonindigenous Aquatic Species
The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and...
Great Lakes Aquatic Nuisance Species Information System
The Great Lakes Aquatic Nuisance Species Information System (GLANSIS) was developed by the NOAA Great Lakes Science Center to monitor nonindigenous aquatic species introductions into the Great Lakes region.