Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42978
A novel technique for isolating DNA from Tempus™ blood RNA tubes after RNA isolation A novel technique for isolating DNA from Tempus™ blood RNA tubes after RNA isolation
Objective We use Tempus blood RNA tubes (Applied Biosystems) during health assessments of American moose (Alces alces spp.) as a minimally invasive means to obtain RNA. Here we describe a novel protocol to additionally isolate high-quality DNA from the supernatant remaining after the RNA isolation methodology. Metrics used to qualify DNA quality included measuring the concentration...
Authors
Jason A. Ferrante, Michelle R. Giles, Emily Benzie, Margaret Hunter
Using partial aggregation in spatial capture recapture Using partial aggregation in spatial capture recapture
Spatial capture–recapture (SCR) models are commonly used for analysing data collected using noninvasive genetic sampling (NGS). Opportunistic NGS often leads to detections that do not occur at discrete detector locations. Therefore, spatial aggregation of individual detections into fixed detectors (e.g., centre of grid cells) is an option to increase computing speed of SCR analyses...
Authors
Cyril Milleret, Pierre Dupont, Henrik Broseth, Jonas Kindberg, J. Andrew Royle, Richard Bischof
Real-time decision-making during emergency disease outbreaks Real-time decision-making during emergency disease outbreaks
In the event of a new infectious disease outbreak, mathematical and simulation models are commonly used to inform policy by evaluating which control strategies will minimize the impact of the epidemic. In the early stages of such outbreaks, substantial parameter uncertainty may limit the ability of models to provide accurate predictions, and policymakers do not have the luxury of waiting...
Authors
William J. M. Probert, Chris P. Jewell, Marleen Werkman, Christopher.J. Fonnesbeck, Yoshitaka Goto, Michael C. Runge, Satoshi Sekiguchi, Katriona Shea, Matt J. Keeling, Matthew J. Ferrari, Michael J. Tildesley
Impacts of coastal land use and shoreline armoring on estuarine ecosystems: An introduction to a special issue Impacts of coastal land use and shoreline armoring on estuarine ecosystems: An introduction to a special issue
The nearshore land-water interface is an important ecological zone that faces anthropogenic pressure from development in coastal regions throughout the world. Coastal waters and estuaries like Chesapeake Bay receive and process land discharges loaded with anthropogenic nutrients and other pollutants that cause eutrophication, hypoxia, and other damage to shallow-water ecosystems. In...
Authors
Diann J. Prosser, Thomas E. Jordan, Jessica L. Nagel, Rochelle D. Seitz, Donald E. Weller, Dennis F. Whigham
Sex-specific variation in denning by brown bears Sex-specific variation in denning by brown bears
Denning characteristics of brown bears (Ursus arctos) have been described in numerous studies; however, population specific factors (i.e., landscape characteristics and climate) can greatly influence the location and timing of denning. Our objective was to evaluate den-site characteristics and denning chronology for male and female brown bears in Lake Clark National Park and Preserve...
Authors
Lindsey Mangipane, Jerrold L. Belant, Buck Mangipane, David Gustine, Grant V. Hilderbrand
Examination of contaminant exposure and reproduction of ospreys (Pandion haliaetus) nesting in Delaware Bay and River in 2015 Examination of contaminant exposure and reproduction of ospreys (Pandion haliaetus) nesting in Delaware Bay and River in 2015
A study of ospreys (Pandion haliaetus) nesting in the coastal Inland Bays of Delaware, and the Delaware Bay and Delaware River in 2015 examined spatial and temporal trends in contaminant exposure, food web transfer and reproduction. Concentrations of organochlorine pesticides and metabolites, polychlorinated biphenyls (PCBs), coplanar PCB toxic equivalents, polybrominated diphenyl ethers...
Authors
Barnett A. Rattner, Rebecca S. Lazarus, Thomas G. Bean, Peter C. McGowan, Carl R. Callahan, Richard A. Erickson, Robert Hale
The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes
In this review article, we trace the history of events leading to the development of individual-based models (IBMs) to represent aquatic organisms in rivers and streams. As a metaphor, we present this history as a series of confluences between individual scientists (tributaries) sharing ideas. We describe contributions of these models to science and management. One iconic feature of...
Authors
Henriette I. Jager, Donald L. DeAngelis
Exploring the pathology of an epidermal disease affecting a circum-Antarctic sea star Exploring the pathology of an epidermal disease affecting a circum-Antarctic sea star
Over the past decade, unusual mortality outbreaks have decimated echinoderm populations over broad geographic regions, raising awareness globally of the importance of investigating such events. Echinoderms are key components of marine benthos for top-down and bottom-up regulations of plants and animals; population declines of these individuals can have significant ecosystem-wide effects...
Authors
Laura Nunez-Pons, Thierry M. Work, Carlos Angulo-Preckler, Juan Moles, Conxita Avila
Regional variation in drivers of connectivity for two frog species (Rana pretiosa and R. luteiventris) from the U.S. Pacific Northwest Regional variation in drivers of connectivity for two frog species (Rana pretiosa and R. luteiventris) from the U.S. Pacific Northwest
Comparative landscape genetics has uncovered high levels of variability in which landscape factors affect connectivity among species and regions. However, the relative importance of species traits versus environmental variation for predicting landscape patterns of connectivity is unresolved. We provide evidence from a landscape genetics study of two sister taxa of frogs, the Oregon...
Authors
Jeanne M. Robertson, Melanie A. Murphy, Christopher Pearl, M. J. Adams, Monica I. Paez-Vacas, Susan M. Haig, David S. Pilliod, Andrew Storfer, W. Chris Funk
Mapping and measuring aeolian sand dunes with photogrammetry and LiDAR from unmanned aerial vehicles (UAV) and multispectral satellite imagery on the Paria Plateau, AZ, USA Mapping and measuring aeolian sand dunes with photogrammetry and LiDAR from unmanned aerial vehicles (UAV) and multispectral satellite imagery on the Paria Plateau, AZ, USA
The Paria Plateau is a potentially important but relatively unstudied aeolian sand source area in the Grand Canyon region of Arizona, USA. This study used unmanned aerial vehicle(UAV) - based LiDAR and structure-from-motion (SfM) photogrammetry to produce high-resolution topographic models of aeolian dunes on the plateau. We combined the dune topography data with a high-resolution...
Authors
Daniel Solazzo, Joel B. Sankey, Temuulen T. Sankey, Seth M. Munson
Phenology of hatching, emergence, and end-of-season body size in young-of-year Coho Salmon in thermally contrasting streams draining the Copper River Delta, Alaska Phenology of hatching, emergence, and end-of-season body size in young-of-year Coho Salmon in thermally contrasting streams draining the Copper River Delta, Alaska
Phenology can be linked to individual fitness, particularly in strongly seasonal environments where the timing of events have important consequences for growth, condition, and survival. We studied the phenology of Coho Salmon hatching and emergence in streams with contrasting thermal variability, but in close geographic proximity. Following emergence, we tracked body sizes of cohorts of...
Authors
Emily Y. Campbell, Jason B. Dunham, Gordon H. Reeves, Steve M. Wondzell
International meeting on sarcoptic mange in wildlife, June 2018, Blacksburg, Virginia, USA International meeting on sarcoptic mange in wildlife, June 2018, Blacksburg, Virginia, USA
Sarcoptic mange is a globally distributed disease caused by the burrowing mite Sarcoptes scabiei, which also causes scabies in humans. A wide and increasing number of wild mammal species are reported to be susceptible to mange; however, the impacts of the disease in wildlife populations, mechanisms involved in its eco-epidemiological dynamics, and risks to public and ecosystem health are...
Authors
Francisca Astorga, Scott Carver, Emily S. Almberg, Giovane R. Sousa, Kimberly Wingfield, Kevin D. Niedringhaus, Peach Van Wick, Luca Rossi, Yue Xie, Paul C. Cross, Samer Angelone, Christian Gortazar, Luis E. Escobar