Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42777
Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding
Insufficient water sample volumes can be a limiting factor for detecting species with environmental DNA (eDNA) from aquatic habitats. We compared detections of freshwater mussel (Unionidae) communities using large water sample volumes and dead-end hollow fiber ultrafiltration (D-HFUF or DEUF) with traditional eDNA filtration methods that use relatively small water sample volumes. Unionid...
Authors
Anna M. McKee, Katy E. Klymus, Yer Lor, Marissa H Kaminski, Tariq Tajjioui, Nathan Johnson, Matthew Carroll, Christopher Goodson, Stephen Frank Spear
U.S. Geological Survey science vision for native freshwater mussel research in the United States U.S. Geological Survey science vision for native freshwater mussel research in the United States
Executive Summary North America is a global center for native freshwater mussel (order Unionida, hereinafter “mussels”) diversity, with more than 350 species. Mussels are among the most imperiled fauna on the planet. Reasons for both local and widespread declines in mussels are mostly unknown, although the threats may include habitat loss and fragmentation, diseases, environmental...
Authors
Teresa J. Newton, Nathan A. Johnson, David H. Hu
An agent-based model to quantify energetics, movement and habitat selection of mid-continent mallards in the Mississippi Alluvial Valley An agent-based model to quantify energetics, movement and habitat selection of mid-continent mallards in the Mississippi Alluvial Valley
The dynamics of wintering waterfowl populations at the landscape scale are the result of complex interactions of environmental, behavioral and energetic drivers. Agent-based models provide a method to directly link these factors in a spatially explicit framework and allow the emergence of patterns from the aggregation of individual agent actions. We adapted the Spatially-explicit...
Authors
Florian G. Weller, Elisabeth B. Webb, Sean Fogenburg, William S. Beatty, Dylan Kesler, Robert H. Blenk, Kevin M. Ringelman, Matt L. Miller, John M. Eadie
Seasonal differences and grazing pressure alter the fate of gold nanoparticles in a microcosm experiment Seasonal differences and grazing pressure alter the fate of gold nanoparticles in a microcosm experiment
Gold nanoparticles (AuNPs) are used as models to track and predict NP fates and effects in ecosystems. Previous work found that aquatic macrophytes and their associated biofilm primarily drove the fate of AuNPs within aquatic ecosystems and that seasonality was an important abiotic factor in the fate of AuNPs. Therefore, the present work aims to study if grazers, by feeding on these...
Authors
Christina M. Bergemann, Astrid Avellan, Brittany G. Perrotta, Emily S. Bernhardt, Marie Simonin
A nitrifier-enriched microbial community contributes to the degradation of environmental DNA A nitrifier-enriched microbial community contributes to the degradation of environmental DNA
Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations of eDNA...
Authors
Rachelle Elaine Beattie, Caren C. Helbing, Jacob J. Imbery, Katy E. Klymus, Jonathan Lopez Duran, Cathy A. Richter, Anita A. Thambirajah, Nathan Thompson, Thea M. Edwards
Proximate factors affecting mortality and maternal abandonment of young free-roaming feral horse foals Proximate factors affecting mortality and maternal abandonment of young free-roaming feral horse foals
The burgeoning population of feral horses in the American west is due to high population growth, resulting from low adult mortality and high foal survival. In two populations of feral horses in western Utah, USA only 15 foals died (5%; mean age
Authors
Sarah R. B. King, Mary J. Cole, Christine Barton, Kathryn A. Schoenecker
Prioritizing science efforts to inform decision making on public lands Prioritizing science efforts to inform decision making on public lands
Public land management agencies in the US are committed to using science-informed decision making, but there has been little research on the types and topics of science that managers need most to inform their decisions. We used the National Environmental Policy Act to identify four types of science information needed for making decisions relevant to public lands: (1) data on resources of...
Authors
Sarah K. Carter, Travis Haby, Jennifer K. Meineke, Alison C. Foster, Laine E. McCall, Leigh Espy, Megan A. Gilbert, Jeffrey E. Herrick, Karen Prentice
Importance of dense aquatic vegetation in seasonal phosphate and particle transport in an agricultural headwater stream Importance of dense aquatic vegetation in seasonal phosphate and particle transport in an agricultural headwater stream
Agricultural headwater streams and ditches commonly host dense stands of aquatic vegetation that grow and decay over seasons and exert physical and biological controls on the transport of nutrients from cropland to larger rivers. This study examined changes in the transport of phosphorus (P) in an agricultural drainage ditch in the Maumee River Basin (Ohio, USA) by conducting constant...
Authors
Hannah R. Field, Audrey H. Sawyer, Susan A. Welch, Ryan K. Benefiel, Devan M. Mathie, James M. Hood, Ethan D. Pawlowski, Diana L. Karwan, Rebecca M. Kreiling, Zackary I. Johnson, Brittany R. Hanrahan, Kevin W. King
Mussel mass mortality in the Clinch River, USA: Metabolomics detects affected pathways and biomarkers of stress Mussel mass mortality in the Clinch River, USA: Metabolomics detects affected pathways and biomarkers of stress
Biologists monitoring freshwater mussel (order Unionida) populations rely on behavioral, often subjective, signs to identify moribund (“sick”) or stressed mussels, such as gaping valves and slow response to probing, and they lack clinical indicators to support a diagnosis. As part of a multi-year study to investigate causes of reoccurring mortality of pheasantshell (Ortmanniana pectorosa...
Authors
Joel G. Putnam, J. Nolan Steiner, Jordon Richard, Eric Leis, Tony Goldberg, Christopher D. Dunn, Rose Agbalog, Susan Knowles, Diane L. Waller
Gulf of Mexico Marine Assessment Project for Protected Species: Sea Turtles Gulf of Mexico Marine Assessment Project for Protected Species: Sea Turtles
The overarching goal of the Gulf of Mexico Marine Assessment Project for Protected Species: sea turtles (GOMMAPPS) study was to collect broad-scale information on the distribution and abundance of sea turtles in the Gulf to inform seasonally- and spatially-explicit density estimates for priority species. GOMMAPPS represents a multi-agency partnership between BOEM, USFWS, NOAA, and USGS...
Authors
Margaret Lamont, Kristen Hart
Sharing FAIR monitoring program data improves discoverability and reuse Sharing FAIR monitoring program data improves discoverability and reuse
Data resulting from environmental monitoring programs are valuable assets for natural resource managers, decision-makers, and researchers. These data are often collected to inform specific reporting needs or decisions with a specific timeframe. While program-oriented data and related publications are effective for meeting program goals, sharing well-documented data and metadata allows...
Authors
Jennifer M. Bayer, Rebecca A Scully, Erin K. Dlabola, Jennifer L Courtwright, Christine L Hirsch, David P Hockman-Wert, Scott W. Miller, Brett B. Roper, W. Carl Saunders, Marcia N Snyder
Supplying ecosystem services on US rangelands Supplying ecosystem services on US rangelands
Rangelands comprise 40% of the conterminous United States and they supply essential ecosystem services to society. A scenario assessment was conducted to determine how accelerating biophysical and societal drivers may modify their future availability. Four scenarios emerged: two may maintain rural communities by sustaining the prevailing ecosystem service of beef cattle production, and...
Authors
David D. Briske, Steven R. Archer, Emily Burchfield, William Burnidge, Justin D. Derner, Hannah Gosnell, Jerry Hatfield, Clare E. Kazanski, Mona Khalil, Tyler J. Lark, Pamela L. Nagler, Osvaldo E. Sala, Nathan F. Sayre, Kimberly R. Stackhouse-Lawson