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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42707

Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway

We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014–2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP) and HP IAVs to refine inference on...
Authors
Andrew M. Ramey, Nichola J. Hill, Troy Cline, Magdalena Plancarte, Susan De La Cruz, Michael L. Casazza, Joshua T. Ackerman, Joseph P. Fleskes, T. Winston Vickers, Andrew B. Reeves, Frances Gulland, Christine Fontaine, Diann J. Prosser, Jonathan Runstadler, Walter M. Boyce

Challenges and solutions for applying the travel cost demand model to geographically remote visitor destinations: A case study of bear viewing at Katmai National Park and Preserve Challenges and solutions for applying the travel cost demand model to geographically remote visitor destinations: A case study of bear viewing at Katmai National Park and Preserve

Remote and unique destinations present difficulties when attempting to construct traditional travel cost models to value recreation demand. The biggest limitation comes from the lack of variation in the dependent variable, defined as the number of trips taken over a set time frame. There are various approaches that can be used for overcoming limitations of the traditional travel cost...
Authors
Leslie Richardson, Christopher Huber, John B. Loomis

Using pharyngeal teeth and chewing pads to estimate juvenile Silver Carp total length in the La Grange Reach, Illinois River Using pharyngeal teeth and chewing pads to estimate juvenile Silver Carp total length in the La Grange Reach, Illinois River

The Silver Carp Hypophthalmichthys molitrix is an invasive species in the Mississippi River basin; an understanding of their vulnerability to predation as juveniles may inform control by native predators and predator enhancement (e.g., stocking). Digestion of Silver Carp prey recovered from diets makes it difficult to determine the size‐classes that are most vulnerable to predation by...
Authors
Eli G. Lampo, Brent C. Knights, Jonathan M. Vallazza, Cory A. Anderson, Will T. Rechkemmer, Levi E. Solomon, Andrew F. Casper, Richard M. Pendleton, James T. Lamer

Shifts in an invasive rodent community favoring black rats (Rattus rattus) following restoration of native forest Shifts in an invasive rodent community favoring black rats (Rattus rattus) following restoration of native forest

One potential, unintended ecological consequence accompanying forest restoration is a shift in invasive animal populations, potentially impacting conservation targets. Eighteen years after initial restoration (ungulate exclusion, invasive plant control, and out planting native species) at a 4 ha site on Maui, Hawai'i, we compared invasive rodent communities in a restored native dry...
Authors
Aaron B. Shiels, Arthur C. Medeiros, Erica I. von Allmen

Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data

Deformed wing virus (DWV) is a major pathogen of concern to apiculture, and recent reports have indicated the local predominance and potential virulence of recombinants between DWV and a related virus, Varroa destructor virus 1 (VDV). However, little is known about the frequency and titer of VDV and recombinants relative to DWV generally. In this study, I assessed the relative occurrence...
Authors
Robert S. Cornman

Using dissolved carbon dioxide to alter the behavior of invasive round goby Using dissolved carbon dioxide to alter the behavior of invasive round goby

Fisheries managers need effective methods to limit the spread of invasive round goby Neogobius melanostomus in North America. Elevating carbon dioxide (CO2) in water at pinch points of rivers (e.g., inside locks) is one approach showing potential to deter the passage of invasive fishes, such as bigheaded carps Hypophthalmichthys spp., but the effectiveness of this method to alter round...
Authors
Aaron R. Cupp, John Tix, Justin Smerud, Richard A. Erickson, Kim T. Fredricks, Jon Amberg, C.D. Suski, Robert Wakeman

Nearshore fish community Nearshore fish community

Lake Ontario’s nearshore fish community consists of a diverse assemblage of warm- and cool-water species. The “nearshore zone,” loosely separated from the “offshore zones” by the 15-m depth contour, consists of complex habitats spanning a gamut from vast open-coastal areas to sheltered embayments and wetlands. Lake Ontario’s nearshore habitat has been affected to varying degrees by human
Authors
James A. Hoyle, Michael J. Connerton, Dawn E. Dittman, Dimitry Gorsky, Jana R. Lantry, Alastair Mathers, Scott L. Schlueter, Maureen Walsh, Brian Weidel, Michael J. Yuille

The lethality of hot water and ozone to aquatic invasive species The lethality of hot water and ozone to aquatic invasive species

The spread of Aquatic Invasive Species (AIS) between the Great Lakes and Mississippi River Basin by way of the Chicago Area Waterway System (CAWS) is a pressing concern to resource managers in the Midwest region. Augmenting this spread are watercrafts traveling through the CAWS locks and dams. AIS are able to attach to boat hulls, equipment, or are present in the surrounding water during...
Authors
Riley Buley

Harvesting wildlife affected by climate change: a modelling and management approach for polar bears Harvesting wildlife affected by climate change: a modelling and management approach for polar bears

The conservation of many wildlife species requires understanding the demographic effects of climate change, including interactions between climate change and harvest, which can provide cultural, nutritional or economic value to humans.We present a demographic model that is based on the polar bear Ursus maritimus life cycle and includes density-dependent relationships linking vital rates...
Authors
Eric V. Regehr, Ryan H. Wilson, Karyn D. Rode, Michael C. Runge, Harry Stern

Experimental landscape reduction of wild rodents increases movements in the invasive brown treesnake (Boiga irregularis) Experimental landscape reduction of wild rodents increases movements in the invasive brown treesnake (Boiga irregularis)

Experimental studies evaluating the effects of food availability on the movement of free-ranging animals generally involve food supplementation rather than suppression. Both approaches can yield similar insights, but we were interested in the potential for using food suppression for the management and control of invasive predators, in particular, the brown treesnake (Boiga irregularis)...
Authors
Michelle Christy, Julie A. Savidge, Amy A. Yackel Adams, James E. Gragg, Gordon H. Rodda

Taxonomic and compositional differences of ground-dwelling arthropods in riparian habitats in Glen Canyon, Arizona, USA Taxonomic and compositional differences of ground-dwelling arthropods in riparian habitats in Glen Canyon, Arizona, USA

The disturbance history, plant species composition, productivity, and structural complexity of a site can exert bottom-up controls on arthropod diversity, abundance, and trophic structure. Regulation alters the hydrology and disturbance regimes of rivers and affects riparian habitats by changing plant quality parameters. Fifty years of regulation along the Colorado River downstream of...
Authors
Barbara Ralston, Neil S. Cobb, Sandra L. Brantley, Jacob Higgins, Charles B. Yackulic

Optimal control of an invasive species using a reaction-diffusion model and linear programming Optimal control of an invasive species using a reaction-diffusion model and linear programming

Managing an invasive species is particularly challenging as little is generally known about the species’ biological characteristics in its new habitat. In practice, removal of individuals often starts before the species is studied to provide the information that will later improve control. Therefore, the locations and the amount of control have to be determined in the face of great...
Authors
Mathieu Bonneau, Fred A. Johnson, Brian J. Smith, Christina M. Romagosa, Julien Martin, Frank J. Mazzotti
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