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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Landscape context and the biophysical response of rivers to dam removal in the United States Landscape context and the biophysical response of rivers to dam removal in the United States

Dams have been a fundamental part of the U.S. national agenda over the past two hundred years. Recently, however, dam removal has emerged as a strategy for addressing aging, obsolete infrastructure and more than 1,100 dams have been removed since the 1970s. However, only 130 of these removals had any ecological or geomorphic assessments, and fewer than half of those included before- and...
Authors
Melissa M. Foley, Francis J. Magilligan, Christian E. Torgersen, Jon J. Major, Chauncey W. Anderson, Patrick J. Connolly, Daniel J. Wieferich, Patrick B. Shafroth, James E. Evans, Dana M. Infante, Laura Craig

Increased Arctic sea ice drift alters adult female polar bear movements and energetics Increased Arctic sea ice drift alters adult female polar bear movements and energetics

Recent reductions in thickness and extent have increased drift rates of Arctic sea ice. Increased ice drift could significantly affect the movements and the energy balance of polar bears (Ursus maritimus) which forage, nearly exclusively, on this substrate. We used radio-tracking and ice drift data to quantify the influence of increased drift on bear movements, and we modeled the...
Authors
George M. Durner, David C. Douglas, Shannon Albeke, John P. Whiteman, Steven C. Amstrup, Evan Richardson, Ryan H. Wilson, Merav Ben-David

Coastal habitat and biological community response to dam removal on the Elwha River Coastal habitat and biological community response to dam removal on the Elwha River

Habitat diversity and heterogeneity play a fundamental role in structuring ecological communities. Dam emplacement and removal can fundamentally alter habitat characteristics, which in turn can affect associated biological communities. Beginning in the early 1900s, the Elwha and Glines Canyon dams in Washington, USA, withheld an estimated 30 million tonnes of sediment from river, coastal...
Authors
Melissa M. Foley, Jonathan A. Warrick, Andrew C. Ritchie, Andrew W. Stevens, Patrick B. Shafroth, Jeffrey J. Duda, Matthew M. Beirne, Rebecca Paradis, Guy R. Gelfenbaum, Randall McCoy, Erin S. Cubley

Building a state-space life cycle model for naturally produced Snake River fall Chinook salmon Building a state-space life cycle model for naturally produced Snake River fall Chinook salmon

In 1992, Snake River basin fall Chinook salmon (Oncorhynchus tshawytscha) were listed for protection under the U.S. Endangered Species Act (NMFS 1992) and the population remained below 1000 individuals until 2000. Since then, returns from natural production has rebounded to over 20,000 spawners owing to a host of factors including reduced harvest (Peters et al. 2001), stable minimum...
Authors
Russell Perry, John Plumb, Kenneth Tiffan, William P. Connor, Thomas D. Cooney, William Young

Human interactions with sirenians (manatees and dugongs) Human interactions with sirenians (manatees and dugongs)

There are three extant sirenian species of the Trichechidae family and one living Dugongidae family member. Given their close ties to coastal and often urbanized habitats, sirenians are exposed to many types of anthropogenic activities that result in challenges to their well-being, poor health, and even death. In the wild, they are exposed to direct and indirect local pressures as well...
Authors
Robert K. Bonde, Mark Flint

Long-term video surveillance and automated analyses reveal arousal patterns in groups of hibernating bats Long-term video surveillance and automated analyses reveal arousal patterns in groups of hibernating bats

Understanding natural behaviours is essential to determining how animals deal with new threats (e.g. emerging diseases). However, natural behaviours of animals with cryptic lifestyles, like hibernating bats, are often poorly characterized. White-nose syndrome (WNS) is an unprecedented disease threatening multiple species of hibernating bats, and pathogen-induced changes to host behaviour...
Authors
David T. S. Hayman, Paul M. Cryan, Paul D. Fricker, Nicholas G. Dannemiller

Assessing welfare of individual sirenians in the wild and in captivity Assessing welfare of individual sirenians in the wild and in captivity

Assessing the welfare of wild populations of sirenians has required a “generalist” approach. The outcome has been a subjective decision as to whether what the observers are witnessing in an individual or group of animals is normal and whether that has positive or negative consequences. The understanding of sirenian welfare requirements, and a decision process for whether to support and...
Authors
Mark Flint, Robert K. Bonde

Sparrow nest survival in relation to prescribed fire and woody plant invasion in a northern mixed-grass prairie Sparrow nest survival in relation to prescribed fire and woody plant invasion in a northern mixed-grass prairie

Prescribed fire is used to reverse invasion by woody vegetation on grasslands, but managers often are uncertain whether influences of shrub and tree reduction outweigh potential effects of fire on nest survival of grassland birds. During the 2001–2003 breeding seasons, we examined relationships of prescribed fire and woody vegetation to nest survival of clay-colored sparrow (Spizella...
Authors
Robert K. Murphy, Terry L. Shaffer, Todd A. Grant, James L. Derrig, Cory S. Rubin, Courtney K. Kerns

Used-habitat calibration plots: A new procedure for validating species distribution, resource selection, and step-selection models Used-habitat calibration plots: A new procedure for validating species distribution, resource selection, and step-selection models

“Species distribution modeling” was recently ranked as one of the top five “research fronts” in ecology and the environmental sciences by ISI's Essential Science Indicators (Renner and Warton 2013), reflecting the importance of predicting how species distributions will respond to anthropogenic change. Unfortunately, species distribution models (SDMs) often perform poorly when applied to...
Authors
John R. Fieberg, James D. Forester, Garrett M. Street, Douglas H. Johnson, Althea A. ArchMiller, Jason Matthiopoulos

A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections

Channel migration is the primary mechanism of floodplain turnover in meandering rivers and is essential to the persistence of riparian ecosystems. Channel migration is driven by river flows, but short-term records cannot disentangle the effects of land use, flow diversion, past floods, and climate change. We used three data sets to quantify nearly two centuries of channel migration on...
Authors
Derek M. Schook, Sara L. Rathburn, Jonathan M. Friedman, J. Marshall Wolf

Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest

Amount and diversity of bird-dispersed seed rain play important roles in determining forest composition, yet neither is easy to quantify. The complex ecological processes that influence seed movement make the best approach highly context specific. Although recent advances in seed rain theory emphasize quantifying source-specific seed shadows, many ecological questions can be addressed u...
Authors
Eli Rose, Meredith Stewart, Andrew Brinkman, Eben H. Paxton, Stephanie G. Yelenik

Evidence of absence (v2.0) software user guide Evidence of absence (v2.0) software user guide

Evidence of Absence software (EoA) is a user-friendly software application for estimating bird and bat fatalities at wind farms and for designing search protocols. The software is particularly useful in addressing whether the number of fatalities is below a given threshold and what search parameters are needed to give assurance that thresholds were not exceeded. The software also...
Authors
Daniel Dalthorp, Manuela M. Huso, David Dail
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