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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42876

Comparative performance and trend of remotely sensed phenology and productivity metrics across the Western United States Comparative performance and trend of remotely sensed phenology and productivity metrics across the Western United States

Vegetation phenology and productivity play a crucial role in surface energy balance, plant and animal distribution, and animal movement and habitat use and can be measured with remote sensing metrics including start of season (SOS), peak instantaneous rate of green-up date (PIRGd), peak of season (POS), end of season (EOS), and integrated vegetation indices. However, for most metrics, we...
Authors
Tabitha A. Graves, Ethan Edward Berman, Nathaniel Mikle, Jerod Merkle, Aaron N. Johnston, Geneva W. Chong

U.S. Geological Survey—Northern Prairie Wildlife Research Center 2018 research activity report U.S. Geological Survey—Northern Prairie Wildlife Research Center 2018 research activity report

The mission of Northern Prairie Wildlife Research Center is to provide scientific information needed to conserve and manage the Nation’s natural capital for current and future generations, with an emphasis on migratory birds, Department of the Interior trust resources, and ecosystems of the Nation’s interior. This report provides an overview of the studies conducted at Northern Prairie...

Evaluation of acute and chronic toxicity of nickel and zinc to 2 sensitive freshwater benthic invertebrates using refined testing methods Evaluation of acute and chronic toxicity of nickel and zinc to 2 sensitive freshwater benthic invertebrates using refined testing methods

The US Environmental Protection Agency (USEPA) is reviewing the protectiveness of the national ambient water quality criteria (WQC) for nickel (Ni) and zinc (Zn) and compiling toxicity databases to update the WQC. An amphipod (Hyalella azteca) and a unionid mussel (Lampsilis siliquoidea) have shown high sensitivity to Ni and Zn in previous studies. However, there remained uncertainties...
Authors
Ning Wang, James L. Kunz, Danielle M. Cleveland, Jeffery A. Steevens, Edward J. Hammer, Eric Van Genderen, Adam C. Ryan, Christian E. Schlekat

A hybrid approach for predictive soil property mapping using conventional soil survey data A hybrid approach for predictive soil property mapping using conventional soil survey data

Soil property maps are important for land management and earth systems modeling. A new hybrid point-disaggregation predictive soil property mapping strategy improved mapping in the Colorado River Basin, and can be applied to other areas with similar data (e.g. conterminous United States). This new approach increased sample size ~6-fold over past efforts. Random forests related...
Authors
Travis W. Nauman, Michael C. Duniway

Evaluation of genetic structuring within GIS‐derived Brook Trout management units Evaluation of genetic structuring within GIS‐derived Brook Trout management units

Delineation of management units across broad spatial scales can help to visualize population structuring and identify conservation opportunities. Geographical information system (GIS) approaches can be useful for developing broad‐scale management units, especially when paired with field data that can validate the GIS‐based delineations. Genetic data can be useful for evaluating whether...
Authors
Lucas Nathan, Y. Kanno, Benjamin Letcher, Amy B. Welsh, Andrew R. Whiteley, Jason C. Vokoun

The freshwater mysid Mysis diluviana (Audzijonyte and Väinölä, 2005) (Mysida: Mysidae) consumes detritus in the presence of Daphnia (Cladocera: Daphniidae) The freshwater mysid Mysis diluviana (Audzijonyte and Väinölä, 2005) (Mysida: Mysidae) consumes detritus in the presence of Daphnia (Cladocera: Daphniidae)

Freshwater mysids of the Mysis relicta group are omnivorous macroinvertebrates that form an important link between fishes and lower trophic levels in many north temperate to Arctic lakes, where they exhibit diel vertical migration (DVM) to exploit subsurface food-rich layers at night. Benthic food resources have been assumed to be less important for mysid diets than pelagic zooplankton...
Authors
Jessica E. Griffin, Brian O’Malley, Jason D. Stockwell

Dynamics of lake trout production in the main basin of Lake Huron Dynamics of lake trout production in the main basin of Lake Huron

To inform lake trout (Salvelinus namaycush) fishery management in Lake Huron that has undergone rapid ecosystem changes, we quantified lake trout production dynamics by coupling age-structured stock assessment and fish bioenergetics models. Our approach revealed the connection between piscivore production and prey consumption, included growth compensation to reproduction losses, and...
Authors
Ji X. He, James R. Bence, Charles P. Madenjian, Randall M. Claramunt

Detection of SARS-CoV-2 by RNAscope® in situ hybridization and immunohistochemistry techniques Detection of SARS-CoV-2 by RNAscope® in situ hybridization and immunohistochemistry techniques

In situ hybridization (ISH) and immunohistochemistry (IHC) are essential tools to characterize SARS-CoV-2 infection and tropism in naturally and experimentally infected animals and also for diagnostic purposes. Here, we describe three RNAscope®-based ISH assays targeting the ORF1ab, spike, and nucleocapsid genes and IHC assays targeting the spike and nucleocapsid proteins of SARS-CoV-2.
Authors
Mariano Carossino, Hon S. Ip, Jurgen a. Richt, Kendra Schultz, Kimberly Harper, Alan T. Loynachan, Fabio Del Piero, Udeni B.R. Balasuriya

The catastrophic decline of tortoises at a fenced natural area The catastrophic decline of tortoises at a fenced natural area

Agassiz’s desert tortoise (Gopherus agassizii), a threatened species of the southwestern United States, has severely declined to the point where 76% of populations in critical habitat (Tortoise Conservation Areas) are below viability. The potential for rapid recovery of wild populations is low because females require 12–20 years to reach reproductive maturity and produce few eggs...
Authors
Kristin H. Berry, Julie L. Yee, Timothy A. Shields, Laura Stockton

Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish

Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is challenging as it is time consuming for personnel and can be stressful for the fish...
Authors
Nicholas Bravata, Dylan Kelly, Jesse Eickholt, Janine Bryan, Scott M. Miehls, Daniel Zielinski

Forest density intensifies the importance of snowpack to growth in water-limited pine forests Forest density intensifies the importance of snowpack to growth in water-limited pine forests

Warming climate and resulting declines in seasonal snowpack have been associated with drought stress and tree mortality in seasonally snow‐covered watersheds worldwide. Meanwhile, increasing forest density has further exacerbated drought stress due to intensified tree‐tree competition. Using a uniquely detailed dataset of population‐level forest growth (n=2495 sampled trees), we examined...
Authors
Kelly Erika Gleason, John B. Bradford, Anthony W. D’Amato, Shawn Fraver, Brian J. Palik, Michael A. Battaglia

Macroinvertebrate oviposition habitat selectivity and egg-mass desiccation tolerances: Implications for population dynamics in large regulated rivers Macroinvertebrate oviposition habitat selectivity and egg-mass desiccation tolerances: Implications for population dynamics in large regulated rivers

Aquatic insects exhibit complex life cycles that include egg, larval, adult, and, in some instances, pupal stages. Disturbances at any of these life stages can affect overall population dynamics. Yet, efforts to understand the effects of disturbances, such as hydrologic alterations, overwhelmingly focus on the larval life stage of aquatic insects. We evaluated the potential for load...
Authors
Scott W. Miller, Matt Schroer, Jesse R. Fleri, Theodore A. Kennedy
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