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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42702

Fluorescent biomarkers demonstrate prospects for spreadable vaccines to control disease transmission in wild bats Fluorescent biomarkers demonstrate prospects for spreadable vaccines to control disease transmission in wild bats

Vaccines that autonomously transfer among individuals have been proposed as a strategy to control infectious diseases within inaccessible wildlife populations. However, rates of vaccine spread and epidemiological efficacy in real-world systems remain elusive. Here, we investigate whether topical vaccines that transfer among individuals through social contacts can control vampire bat...
Authors
Kevin M. Bakker, Tonie E. Rocke, Jorge E. Osorio, Rachel C. Abbott, Carlos Tello, Jorge Carerra, William Valderrama, Carlos Shiva, Nestor Falcon, Daniel G. Streicker

Using the STARS Model to evaluate the effects of two proposed projects for the long-term operation of State Water Project Incidental Take Permit Application and CEQA compliance Using the STARS Model to evaluate the effects of two proposed projects for the long-term operation of State Water Project Incidental Take Permit Application and CEQA compliance

The California Department of Water Resources (DWR) requested analysis of juvenile Chinook salmon survival in the Sacramento-San Joaquin River Delta (henceforth identified as “the Delta”) as part of an effects analysis that will be included in an Incidental Take Permit (ITP) Application. This application is in compliance with the California Endangered Species Act (CESA) and Environmental...
Authors
Russell W. Perry, Amy C. Hansen, Scott D. Evans, Tobias J. Kock

Fishway entrance gate experiments with adult American Shad Fishway entrance gate experiments with adult American Shad

The goal of this multiyear study was to examine how changes to an upstream fishway entrance impacted the passage rate of adult American shad (Alosa sapidissima). We evaluated a total of nine treatment conditions that consisted of three fishway entrance gate types and three submergence depths (i.e., the water surface elevation of the tailwater relative to the height of the gate crest)
Authors
Kevin Mulligan, Alexander J. Haro, Brett Towler, Bryan Sojkowski, John Noreika

Upper thermal tolerance and heat shock protein response of juvenile American shad (Alosa sapidissima) Upper thermal tolerance and heat shock protein response of juvenile American shad (Alosa sapidissima)

Juvenile American shad (Alosa sapidissima) experience a wide range of temperatures in rivers before migrating to the ocean. Temperatures in these freshwater environments can vary greatly spatially, seasonally, year-to-year, and can be impacted by anthropogenic factors such as power plant discharge or climate change. Currently, there is uncertainty concerning juvenile American shad...
Authors
Shannon Michael Bayse, Ciaran A Shaughnessy, Amy M. Regish, Stephen D. McCormick

A temporally stratified extension of space‐for‐time Cormack–Jolly–Seber for migratory animals A temporally stratified extension of space‐for‐time Cormack–Jolly–Seber for migratory animals

Understanding drivers of temporal variation in demographic parameters is a central goal of mark‐recapture analysis. To estimate the survival of migrating animal populations in migration corridors, space‐for‐time mark–recapture models employ discrete sampling locations in space to monitor marked populations as they move past monitoring sites, rather than the standard practice of using...
Authors
Dalton J. Hance, Russell Perry, John Plumb, Adam Pope

Adult monarch (Danaus plexippus) abundance is higher in burned sites than in grazed sites Adult monarch (Danaus plexippus) abundance is higher in burned sites than in grazed sites

Much of the remaining suitable habitat for monarchs (Danaus plexippus) in Minnesota is found in tallgrass prairies. We studied the association of adult monarch abundance with use of fire or grazing to manage prairies. Sites (n=20) ranged in size from 1 to 145 hectares and included land owned and managed by the Minnesota DNR, U.S. Fish and Wildlife Service, The Nature Conservancy, and...
Authors
Julia B. Leone, Diane L. Larson, Jennifer L. Larson, Patrick Pennarola, Karen Oberhauser

Using the STARS model to evaluate the effects of the proposed action for the reinitiation of consultation on the coordinated long-term operation of the Central Valley and State Water Project Using the STARS model to evaluate the effects of the proposed action for the reinitiation of consultation on the coordinated long-term operation of the Central Valley and State Water Project

In 2016, the U.S. Bureau of Reclamation (USBR) and California Department of Water Resources requested a reinitiation of consultation under Section 7 of the Endangered Species Act on the coordinated long-term operations of the Central Valley and State Water Projects. This resulted in a Biological Assessment released by USBR in 2019. In its analysis of the Biological Assessment for its...
Authors
Russell W. Perry, Adam C. Pope, Vamsi K. Sridharan

Development of two quantitative PCR assays for detection of several Cottus species from environmental DNA in Pacific coast watersheds of North America Development of two quantitative PCR assays for detection of several Cottus species from environmental DNA in Pacific coast watersheds of North America

We developed two quantitative PCR assays for use with environmental DNA (eDNA) to detect numerous species in the genus Cottus that are indigenous to the Pacific coast watersheds of North America. We conducted in vitro assay validations on ten Cottus species and 32 potentially co-occurring non-Cottus species. We demonstrate the efficacy of these assays by field testing eDNA samples...
Authors
Marshal Hoy, Carl Ostberg

Malignant melanoma of Brown Bullhead (Ameiurus nebulosus) in Lake Memphremagog, Vermont/Quebec Malignant melanoma of Brown Bullhead (Ameiurus nebulosus) in Lake Memphremagog, Vermont/Quebec

In 2012, brown bullhead (Ameiurus nebulosus) with large, raised, black growths were first reported from multiple areas within the Vermont portion of Lake Memphremagog. Subsequent surveys conducted from 2014 to 2017 at two sites within the lake indicated a prevalence of 30% in adult brown bullhead 200 mm and above total length. These lesions ranged from slightly raised smooth black areas...
Authors
Vicki S. Blazer, Cassidy H. Shaw, Cheyenne R. Smith, P Emerson, Thomas R. Jones
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