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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42871

Using redundant primer sets to detect multiple native Alaskan fish species from environmental DNA Using redundant primer sets to detect multiple native Alaskan fish species from environmental DNA

Accurate and timely data regarding freshwater fish communities is important for informed decision-making by local, state, tribal, and federal land and resource managers; however, conducting traditional gear-based fish surveys can be an expensive and time-consuming process, particularly in remote areas, like those that characterize much of Alaska. To help address this challenge, we...
Authors
Damian M. Menning, Trey Simmons, Sandra L. Talbot

Mapping Phragmites australis live fractional cover in the lower Mississippi River Delta, Louisiana Mapping Phragmites australis live fractional cover in the lower Mississippi River Delta, Louisiana

In response to a co-occurring non-native scale infestation and Phragmites australis dieback in southeast Louisiana, normalized difference vegetation index (NDVI) satellite mapping was implemented to track P. australis condition in the lower Mississippi River Delta. While the NDVI mapping successfully documented relative condition changes, identification of cause required a quantitative...
Authors
Amina Rangoonwala, Rebecca J. Howard, Elijah W. Ramsey III

Juvenile Coho and Chinook salmon growth, size, and condition linked to watershed-scale salmon spawner abundance Juvenile Coho and Chinook salmon growth, size, and condition linked to watershed-scale salmon spawner abundance

Anadromous Pacific salmon Oncorhynchus spp. are semelparous, and resource subsidies from spawning adult salmon (marine-derived nutrients [MDN]) benefit juvenile salmonids while they rear in freshwater. However, it is unclear if juvenile salmon populations respond predictably to the abundance of spawning salmon at the watershed scale. To address whether hypothesized benefits to rearing...
Authors
Philip J. Joy, Craig A. Stricker, Renae Ivanoff, Shiao Y. Wang, Mark S. Wipfli, Andrew C. Seitz, Jiaqi Huang, Mathew B. Tyers

Quantifying microplastics in Indiana’s Lake Michigan watershed and submerged aquatic vegetation Quantifying microplastics in Indiana’s Lake Michigan watershed and submerged aquatic vegetation

Environmental breakdown of plastics produces synthetic microfibers, a class of microplastics that are most prevalent in surface waters. A main source of these pollutants is wastewater treatment plants which discharge into surface waters, including those that flow into Lake Michigan. Microplastics can settle into aquatic sediment or exist for lengths of time in the swash zone of the lakes...
Authors
Julie R. Peller, Meredith B. Nevers, Muruleedhara Byappanahalli, Mary Anne Evans

Management of the brown-headed cowbird: Implications for endangered species and agricultural damage mitigation Management of the brown-headed cowbird: Implications for endangered species and agricultural damage mitigation

The brown-headed cowbird (Molothrus ater; cowbird) is unique among North American blackbirds (Icteridae) because it is managed to mitigate the negative effects on endangered songbirds and economic losses in agricultural crops. Cowbird brood parasitism can further affect species that are considered threatened or endangered due to anthropogenic land uses. Historically, cowbirds have often...
Authors
Brian D Peer, Barbara E. Kus, Mary J. Whitfield, Linnea S. Hall, Stephen I Rothstein

Semiautomated process for enumeration of fishes from recreational-grade side-scan sonar imagery Semiautomated process for enumeration of fishes from recreational-grade side-scan sonar imagery

The use of hydroacoustic techniques is increasing as scientists search for less invasive ways to monitor fish populations, and using recreational side‐scan sonar (SSS) imagery for monitoring has become more common in aquatic resource management over the last 15 years due in part to its low cost and user‐friendly interface. The time‐consuming nature of manually counting fish targets has...
Authors
Katelyn M Lawson, Josey Lee Ridgway, Andrew T. Mueller, Jacob Faulkner, Robin D. Calfee

Evaluating catchability in a large-scale gillnet survey using hydroacoustics: Making the case for coupled surveys Evaluating catchability in a large-scale gillnet survey using hydroacoustics: Making the case for coupled surveys

Abundance estimates facilitate successful fisheries management. Fisheries agencies often monitor abundance through fishery independent standardized protocols generating relative measures such as catch-per-unit-effort (CPUE), where CPUE is assumed proportional to true abundance. Unfortunately, this assumption is rarely met as fish behavior and environmental conditions influence...
Authors
Mark R. DuFour, Song S. Qian, Christine M Mayer, Christopher Vandergoot

When portfolio theory can help environmental investment planning to reduce climate risk to future environmental outcomes - and when it cannot When portfolio theory can help environmental investment planning to reduce climate risk to future environmental outcomes - and when it cannot

Variability among climate change scenarios produces great uncertainty in what is the best allocation of resources among investments to protect environmental goods in the future. Previous research shows Modern Portfolio Theory (MPT) can help optimize environmental investment targeting to reduce outcome risk with minimal loss of expected level of environmental benefits, but no work has yet
Authors
Amy W. Ando, Jennifer M. Fraterrigo, Glenn R. Guntenspergen, Aparna Howlader, Mindy L. Mallory, Jennifer H. Olker, Samuel Stickley

USGS Illinois River monitoring and evaluation USGS Illinois River monitoring and evaluation

Asian carp monitoring and contract removal will continue throughout the Upper Illinois Waterway system as needed for adaptive management to mitigate, control, and contain Asian carp. Compiling data from monitoring and removal efforts into a centralized database (Illinois River Catch Database application) facilitates data standardization, quality, accessibility, sharing, and analysis to...
Authors
Travis J. Harrison, Kevin D. Hop, Enrika Hlavacek, Brent C. Knights

Reptiles under the conservation umbrella of the greater sage‐grouse Reptiles under the conservation umbrella of the greater sage‐grouse

In conservation paradigms, management actions for umbrella species also benefit co‐occurring species because of overlapping ranges and similar habitat associations. The greater sage‐grouse (Centrocercus urophasianus) is an umbrella species because it occurs across vast sagebrush ecosystems of western North America and is the recipient of extensive habitat conservation and restoration...
Authors
David S. Pilliod, Michelle I. Jeffries, Robert Arkle, Deanna H. Olson

Accuracy of nest fate classification and predator identification from evidence at nests of least terns and piping plovers Accuracy of nest fate classification and predator identification from evidence at nests of least terns and piping plovers

For federally listed species such as Least Tern Sternula antillarum and Piping Plover Charadrius melodus, correct determination of nest fates and causes of nest failure is crucial for understanding population dynamics and improving monitoring programmes. We used video cameras to evaluate nest fate misclassification rate and to identify factors that may cause researchers monitoring nests...
Authors
Alicia K. Andes, Terry L. Shaffer, Mark H. Sherfy, Chantel M. Hofer, Colin M. Dovichin, Susan N. Ellis-Felege

Outside the box: Working with wildlife in biocontainment Outside the box: Working with wildlife in biocontainment

Research with captive wildlife in Animal Biosafety Level 2 (ABSL2) and 3 (ABSL3) facilities is becoming increasingly necessary as emerging and re-emerging diseases involving wildlife have increasing impacts on human, animal, and environmental health. Utilizing wildlife species in a research facility often requires outside the box thinking with specialized knowledge, practices, facilities...
Authors
Elizabeth Falendysz, Dana Marie Calhoun, Carrie Alison Smith, Jonathan M. Sleeman
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