Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42702
Shorebird monitoring using spatially explicit occupancy and abundance Shorebird monitoring using spatially explicit occupancy and abundance
Loss of habitat and human disturbance are major factors in the worldwide decline of shorebird populations, including that of the threatened migratory piping plover (Charadrius melodus). From 2013 to 2018, we conducted land-based surveys of the shorebird community every other week during the peak piping plover season (September to March). We assessed the ability of a thin plate spline...
Authors
Eve Bohnett, Jessica Schulz, Robert C. Dobbs, Thomas Hoctor, Dave Hulse, Bilal Ahmad, Wajid Rashid, Hardin Waddle
Effects of nitrate and conductivity on embryo-larval fathead minnows Effects of nitrate and conductivity on embryo-larval fathead minnows
Nitrate concentrations have been rising in surface waters over the last century and now frequently exceed drinking water standards and environmental safety benchmarks globally. Health-wise, these trends are concerning because nitrate has been shown to disrupt endocrine function and developmental outcomes. The present study investigated potential sublethal effects of nitrate on developing...
Authors
Thea M. Edwards, Daniel J. Lamm, Joel J. Harvey
Demographics and gross pathology of scoters and scaups killed by the Cosco Busan oil spill in California Demographics and gross pathology of scoters and scaups killed by the Cosco Busan oil spill in California
Unusual wildlife mortality events provide a unique opportunity to collect information on demographics, disease, and body condition in affected wildlife, which may be useful for informing oil spill damage assessments and future spill responses. In November 2007, the Cosco Busan Oil Spill occurred in San Francisco Bay, California, a globally important wintering area for waterfowl. The...
Authors
Jessie Beck, Ryan D. Carle, HannahRose M. Nevins, Susan E.W. De La Cruz, Erica Donnelly-Greenan
A simplified method for value of information using constructed scales A simplified method for value of information using constructed scales
The value of information is a central concept in decision analysis, used to quantify how much the expected outcome of a decision would be improved if epistemic uncertainty could be resolved prior to committing to a course of action. One of the challenges, however, in quantitative analysis of the value of information is that the calculations are demanding, especially in requiring...
Authors
Michael C. Runge, Clark S. Rushing, James E. Lyons, Madeleine A. Rubenstein
How do ambient conditions and management actions affect manatee movements and habitat use? How do ambient conditions and management actions affect manatee movements and habitat use?
Kings Bay in northwest Florida, USA, is an important winter home of the largest aggregation of Florida manatee (Trichechus manatus latirostris), and the only location in the United States where visitors legally swim and interact with manatees. In addition to ambient conditions, visitors to the area and management actions have the potential to influence manatee behaviors. We tracked 32...
Authors
Daniel Slone, Susan M. Butler, James P. Reid, Joyce Kleen, Joyce Palmer
Goldilocks forbs: Survival is highest outside—but not too far outside—of Wyoming big sagebrush canopies Goldilocks forbs: Survival is highest outside—but not too far outside—of Wyoming big sagebrush canopies
In arid and semiarid systems, positive effects of nurse shrubs generally occur immediately underneath and around shrub canopies, creating microsites that can be targeted to promote plant establishment in restoration settings. Alternatively, the best microsites may occur in the interspace zone immediately surrounding nurse shrubs if positive abiotic effects extend beyond nurse shrub...
Authors
Sofia Koutzoukis, David A. Pyke, Mark W. Brunson, Jacopo A. Baggio, Carmen Calzado-Martinez, Kari E. Veblen
Bilateral palpebral reduction and concurrent mycoplasmosis in a wild Agassiz's desert tortoise (Gopherus agassizii) Bilateral palpebral reduction and concurrent mycoplasmosis in a wild Agassiz's desert tortoise (Gopherus agassizii)
A wild Agassiz's desert tortoise, Gopherus agassizii, with bilateral eyelid reduction and plaques of tissue covering the superior surface of both corneas was examined in the field and subsequently submitted to the University of Florida for diagnostics. Polymerase chain reaction (PCR), from a swab of both corneas, was positive for Mycoplasma agassizii. Two months later, the tortoise was
Authors
Elliott R. Jacobson, Kristin H. Berry, Dennis E Brooks, John F. Roberts
Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus), Southwestern Willow Flycatchers (Empidonax traillii extimus), and Coastal California Gnatcatchers (Polioptila californica californica) at the Santa Fe Dam, Los Angeles County, Cali Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus), Southwestern Willow Flycatchers (Empidonax traillii extimus), and Coastal California Gnatcatchers (Polioptila californica californica) at the Santa Fe Dam, Los Angeles County, Cali
In 2022, we surveyed for Least Bell’s Vireos (Vireo bellii pusillus; vireo), Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher), and Coastal California Gnatcatchers (Polioptila californica californica; gnatcatcher) in the Santa Fe Dam detention basin and along the San Gabriel River upstream from the Santa Fe Dam near Irwindale, California. Four vireo surveys were...
Authors
Suellen Lynn, Barbara E. Kus
Hidden in the hills: Phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species Hidden in the hills: Phylogeny of the freshwater mussel genus Alasmidonta (Bivalvia: Unionidae) and description of a new species
Inaccurate taxonomy can lead to species in need of conservation being overlooked, which makes revisionary systematics crucially important for imperilled groups. The freshwater mussel genus Alasmidonta is one such group in need of study. Here, we take a multilocus phylogenetic approach to assess species-level taxonomy of Alasmidonta and test monophyly of this genus. Phylogenetic inference...
Authors
Nathan V. Whelan, Nathan Johnson, Ashantye’ S. Williams, Michael A. Perkins, Caitlin E. Beaver, Jason W. Mays
Assessing large landscape patterns of potential fire connectivity using circuit methods Assessing large landscape patterns of potential fire connectivity using circuit methods
Context Minimizing negative impacts of wildfire is a major societal objective in fire-prone landscapes. Models of fire connectivity can aid in understanding and managing wildfires by analyzing potential fire spread and conductance patterns. We define ‘fire connectivity’ as the landscape’s capacity to facilitate fire transmission from one point on the landscape to another.Objectives Our...
Authors
Erin K. Buchholtz, Jason R. Kreitler, Douglas J. Shinneman, Michele R. Crist, Julie A. Heinrichs
Paired Air and Stream Temperature Analysis (PASTA) to evaluate groundwater influence on streams Paired Air and Stream Temperature Analysis (PASTA) to evaluate groundwater influence on streams
Groundwater is critical for maintaining stream baseflow and thermal stability; however, the influence of groundwater on streamflow has been difficult to evaluate at broad spatial scales. Techniques such as baseflow separation necessitate streamflow records and do not directly indicate whether groundwater inflow may be sourced from more dynamic shallow flowpaths. We present a web tool...
Authors
Danielle K. Hare, Susanne A. Benz, Barret L. Kurylyk, Zachary Johnson, Neil Terry, Ashley M. Helton
Environmental factors influencing detection efficiency of an acoustic telemetry array and consequences for data interpretation Environmental factors influencing detection efficiency of an acoustic telemetry array and consequences for data interpretation
Background Acoustic telemetry is a commonly used technology to monitor animal occupancy and infer movement in aquatic environments. The information that acoustic telemetry provides is vital for spatial planning and management decisions concerning aquatic and coastal environments by characterizing behaviors and habitats such as spawning aggregations, migrations, corridors, and nurseries...
Authors
Michael Long, Adrian Jordaan, Theodore R. Castro-Santos