Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42768
Pre-breeding foraging ecology of three tern species nesting in the Gulf of Maine Pre-breeding foraging ecology of three tern species nesting in the Gulf of Maine
A variety of seabird species migrate annually from wintering grounds in the Southern Hemisphere to the Gulf of Maine, USA to breed and raise their young. Post-migration, adult seabirds depend on the spatio-temporal match of reliable food resources to replenish energy reserves before breeding. However, the conditions during this critical window of time are becoming increasingly uncertain...
Authors
Rachel M. Bratton, Henry Legett, Paula Shannon, Keenan Yakola, Alexander R. Gerson, Michelle Staudinger
Range-wide persistence of the endangered arroyo toad (Anaxyrus californicus) for 20+ years following a prolonged drought Range-wide persistence of the endangered arroyo toad (Anaxyrus californicus) for 20+ years following a prolonged drought
Prolonged drought due to climate change has negatively impacted amphibians in southern California, U.S.A. Due to the severity and length of the current drought, agencies and researchers had growing concern for the persistence of the arroyo toad (Anaxyrus californicus), an endangered endemic amphibian in this region. Range-wide surveys for this species had not been conducted for at least...
Authors
Cynthia Joan Hitchcock, Elizabeth Gallegos, Adam R. Backlin, Russell Barabe, Peter H. Bloom, Kimberly Boss, Cheryl S. Brehme, Christopher W. Brown, Denise Clark, Elizabeth R. Clark, Kevin Cooper, Julie Donnell, Edward L Ervin, Peter Famolaro, Kim M. Guilliam, Jaquelyn Hancock, Nicholas Hess, Steven Howard, Valerie Hubbartt, Patrick Lieske, Robert E. Lovich, Tritia Matsuda, Katherin Meyer-Wilkins, Kamarul Muri, Barry Nerhus, Jeffrey A. Nordland, Brock Ortega, Robert Packard, Ruben Ramirez, Sam C. Stewart, Samuel Sweet, Manna L. Warburton, Jeffrey Wells, Ryan Winkleman, Kirsten Winter, Brian Zitt, Robert N. Fisher
Harmful algal blooms in the Alaskan Arctic: An emerging threat as oceans warm Harmful algal blooms in the Alaskan Arctic: An emerging threat as oceans warm
Harmful algal blooms (HABs) present an emerging threat to human and ecosystem health in the Alaskan Arctic. Two HAB toxins are of concern in the region: saxitoxins (STXs), a family of compounds produced by the dinoflagellate Alexandrium catenella, and domoic acid (DA), produced by multiple species in the diatom genus Pseudo-nitzschia. These potent neurotoxins cause paralytic and amnesic...
Authors
Donald Anderson, Evangeline Fachon, Katherine Hubbard, Kathi Lefebvre, Peigen Lin, Robert Pickart, Mindy Richlen, Gay Sheffield, Caroline R. Van Hemert
Great diversity of KSα sequences from bat-associated microbiota suggests novel sources of uncharacterized natural products Great diversity of KSα sequences from bat-associated microbiota suggests novel sources of uncharacterized natural products
Polyketide synthases (PKSs) are multidomain enzymes in microorganisms that synthesize complex, bioactive molecules. PKS II systems are iterative, containing only a single representative of each domain: ketosynthase alpha (KSα�), ketosynthase beta and the acyl carrier protein. Any gene encoding for one of these domains is representative of an entire PKS II biosynthetic gene cluster (BGC)...
Authors
Paris S. Hamm, Jennifer J.M. Hathaway, Ara S. Winter, Nicole A. Caimi, Debbie C. Buecher, Ernest W. Valdez, Diana E. Northup
Spatial effects in relation to reproductive performance of Common Murres (Uria aalge) at a re-established colony Spatial effects in relation to reproductive performance of Common Murres (Uria aalge) at a re-established colony
A main goal of seabird colony restoration is for the colony to become self-sustaining. To do so, elevated rates must be attained in (1) reproductive success and (2) recruitment by immigrants and birds produced at the colony. Thus, an understanding of the factors affecting reproductive success and recruitment at restoration sites is vital. We examined how spatial features at the colony...
Authors
Gerard J. McChesney, Julie L. Yee, Michael W. Parker, William M. Perry, Harry R. Carter, Richard T. Golightly, Stephen W. Kress
Hawaiian forest bird conservation strategies for minimizing the risk of extinction: biological and biocultural considerations Hawaiian forest bird conservation strategies for minimizing the risk of extinction: biological and biocultural considerations
The iconic forest birds of Hawai‘i are facing a conservation crisis. Across the Hawaiian Islands, native forest birds have been experiencing population declines that have accelerated in the last one to two decades. While habitat loss, invasive species, and non-native predators have negatively affected forest bird species for hundreds of years, and continue to do so, introduced diseases
Authors
Eben H. Paxton, Megan Laut, Stanton Enomoto, Michelle Bogardus
The role of satellite telemetry data in 21st century conservation of polar bears (Ursus maritimus) The role of satellite telemetry data in 21st century conservation of polar bears (Ursus maritimus)
Satellite telemetry (ST) has played a critical role in the management and conservation of polar bears (Ursus maritimus) over the last 50 years. ST data provide biological information relevant to subpopulation delineation, movements, habitat use, maternal denning, health, human-bear interactions, and accurate estimates of vital rates and abundance. Given that polar bears are distributed...
Authors
Kristin L. Laidre, George M. Durner, Nicholas J Lunn, Eric V. Regehr, Todd C. Atwood, Karyn D. Rode, Jon Aars, Heli Routti, Oystein Wiig, Markus Dyck, Evan S. Richardson, Stephen D Atkinson, Stanislav Belikov, Ian Stirling
Fijian sea krait behavior relates to fine-scale environmental heterogeneity in old-growth coastal forest: The importance of integrated land–sea management for protecting amphibious animals Fijian sea krait behavior relates to fine-scale environmental heterogeneity in old-growth coastal forest: The importance of integrated land–sea management for protecting amphibious animals
The importance of terrestrial coastal ecosystems for maintaining healthy coral reef ecosystems remains understudied. Sea kraits are amphibious snakes that require healthy coral reefs for foraging, but little is known about their requirements of terrestrial habitats, where they slough their skin, digest prey, and breed. Using concurrent microclimate measurements and behavior surveys, we...
Authors
Christopher G. Lowe, Gunnar Keppel, Kalisi Waqa, Stefan Peters, Robert N. Fisher, Annette Scanlon, Tamara Osborne-Naikatini, Nunia Thomas-Moko
Using a mechanistic framework to model the density of an aquatic parasite Ceratonova shasta Using a mechanistic framework to model the density of an aquatic parasite Ceratonova shasta
Ceratonova shasta is a myxozoan parasite endemic to the Pacific Northwest of North America that is linked to low survival rates of juvenile salmonids in some watersheds such as the Klamath River basin. The density of C. shasta actinospores in the water column is typically highest in the spring (March–June), and directly influences infection rates for outmigrating juvenile salmonids...
Authors
H. E. Robinson, Julie D Alexander, Jerri L Bartholomew, Sascha L Hallett, Nicholas J. Hetrick, Russell Perry, Nicholas A. Som
Collaborative hubs: Making the most of predictive epidemic modeling Collaborative hubs: Making the most of predictive epidemic modeling
The COVID-19 pandemic has made it clear that epidemic models play an important role in how governments and the public understand and respond to infectious disease crises. In the early days of the COVID-19 pandemic, models were used first to estimate the true number of infections, then to provide estimates of key parameters, to generate short-term forecasts of outbreak trends, and to...
Authors
Nicholas G. Reich, Justin Lessler, Sebastian Funk, Cecile Viboud, Alessandro Vespignani, Ryan J Tibshirani, Katriona Shea, Melanie Schienle, Michael C. Runge, Roni Rosenfeld, Evan L Ray, Rene Niehus, Helen C Johnson, Michael A Johansson, Harry Hochheiser, Lauren Gardner, Johannes Bracher, Rebecca K. Borchering, Matthew Biggerstaff
Water availability drives instream conditions and life-history of an imperiled desert fish: A case study to inform water management Water availability drives instream conditions and life-history of an imperiled desert fish: A case study to inform water management
In arid ecosystems, available water is a critical, yet limited resource for human consumption, agricultural use, and ecosystem processes—highlighting the importance of developing management strategies to meet the needs of multiple users. Here, we evaluated how water availability influences stream thermal regimes and life-history expressions of Lahontan cutthroat trout (Oncorhynchus...
Authors
Robert K. Al-Chokhachy, Roger Peka, Erik Horgen, Daniel J. Kaus, Tim Loux, Lisa Heki
Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai‘i Forest bird populations at the Big Island National Wildlife Refuge Complex, Hawai‘i
Endemic Hawaiian forest birds have experienced dramatic population declines. The Big Island National Wildlife Refuge Complex (BINWRC) was created for conservation of endangered Hawaiian forest birds and their habitats. Surveys have been conducted at two units of BINWRC to monitor forest bird populations and their response to management actions. We analyzed survey data from 1987 to 2019...
Authors
Steven J. Kendall, Rachel A. Rounds, Richard J. Camp, Ayesha Genz