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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42773

An epidemiological model of virus transmission in salmonid fishes of the Columbia River Basin An epidemiological model of virus transmission in salmonid fishes of the Columbia River Basin

We have developed a dynamic epidemiological model informed by records of viral presence and genotypes to evaluate potential transmission routes maintaining a viral pathogen in economically and culturally important anadromous fish populations. In the Columbia River Basin, infectious hematopoietic necrosis virus (IHNV) causes severe disease, predominantly in juvenile steelhead trout...
Authors
Paige F. B. Ferguson, Rachel Breyta, Ilana L. Brito, Gael Kurath, Shannon L. LaDeau

Passage survival of juvenile steelhead, coho salmon, and Chinook salmon in Lake Scanewa and at Cowlitz Falls Dam, Cowlitz River, Washington, 2010–16 Passage survival of juvenile steelhead, coho salmon, and Chinook salmon in Lake Scanewa and at Cowlitz Falls Dam, Cowlitz River, Washington, 2010–16

A multi-year evaluation was conducted during 2010–16 to evaluate passage survival of juvenile steelhead (Oncorhynchus mykiss), Chinook salmon (O. tshawytscha), and coho salmon (O. kisutch) in Lake Scanewa, and at Cowlitz Falls Dam in the upper Cowlitz River Basin, Washington. Reservoir passage survival was evaluated in 2010, 2011, and 2016, and included the tagging and release of 1,127...
Authors
Theresa L. Liedtke, Tobias J. Kock, William Hurst

Skeletal injuries in small mammals: a multispecies assessment of prevalence and location Skeletal injuries in small mammals: a multispecies assessment of prevalence and location

Wild mammals are known to survive injuries that result in skeletal abnormalities. Quantifying and comparing skeletal injuries among species can provide insight into the factors that cause skeletal injuries and enable survival following an injury. We documented the prevalence and location of structural bone abnormalities in a community of 7 small mammal species inhabiting the White...
Authors
Ryan B. Stephens, Christopher B. Burke, Neal Woodman, Lily B. Poland, Rebecca J. Rowe

The aerosphere as a network connector of organisms and their diseases The aerosphere as a network connector of organisms and their diseases

Aeroecological processes, especially powered flight of animals, can rapidly connect biological communities across the globe. This can have profound consequences for evolutionary diversification, energy and nutrient transfers, and the spread of infectious diseases. The latter is of particular consequence for human populations, since migratory birds are known to host diseases which have a...
Authors
Jeremy D. Ross, Eli S. Bridge, Diann J. Prosser, John Y. Takekawa

Size‐assortative choice and mate availability influences hybridization between red wolves (Canis rufus) and coyotes (Canis latrans) Size‐assortative choice and mate availability influences hybridization between red wolves (Canis rufus) and coyotes (Canis latrans)

Anthropogenic hybridization of historically isolated taxa has become a primary conservation challenge for many imperiled species. Indeed, hybridization between red wolves (Canis rufus) and coyotes (Canis latrans) poses a significant challenge to red wolf recovery. We considered seven hypotheses to assess factors influencing hybridization between red wolves and coyotes via pair‐bonding...
Authors
Joseph W. Hinton, John L. Gittleman, Frank T. van Manen, Michael J. Chamberlain

Gene flow connects coastal populations of a habitat specialist, the Clapper Rail Rallus crepitans Gene flow connects coastal populations of a habitat specialist, the Clapper Rail Rallus crepitans

Examining population genetic structure can reveal patterns of reproductive isolation or population mixing and inform conservation management. Some avian species are predicted to exhibit minimal genetic differentiation among populations as a result of the species high mobility, with habitat specialists tending to show greater fine‐scale genetic structure. To explore the relationship...
Authors
Stephanie S. Coster, Amy B. Welsh, Gary R. Costanzo, Sergio R. Harding, James T. Anderson, Todd E. Katzner

Reduced swimming performance repeatedly evolves upon loss of migration in landlocked populations of Alewife Reduced swimming performance repeatedly evolves upon loss of migration in landlocked populations of Alewife

Whole-organism performance tasks are accomplished by the integration of morphological traits and physiological functions. Understanding how evolutionary change in morphology and physiology influences whole-organism performance will yield insight into the factors that shape its own evolution. We demonstrate that nonmigratory populations of alewife (Alosa pseudoharengus) have evolved...
Authors
Jonathan P. Velotta, Stephen D. McCormick, Andrew W. Jones, Eric T. Schultz

Phase 1 studies summary of major findings of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California Phase 1 studies summary of major findings of the South Bay Salt Pond Restoration Project, South San Francisco Bay, California

Executive Summary The South Bay Salt Pond Restoration Project (Project) is one of the largest restoration efforts in the United States. It is located in South San Francisco Bay of California. It is unique not only for its size—more than 15,000 acres—but also for its location adjacent to one of the nation’s largest urban areas, home to more than 4 million people (Alameda, Santa Clara, and...
Authors
Laura Valoppi

Common hydraulic fracturing fluid additives alter the structure and function of anaerobic microbial communities Common hydraulic fracturing fluid additives alter the structure and function of anaerobic microbial communities

The development of unconventional oil and gas (UOG) resources results in the production of large volumes of wastewater containing a complex mixture of hydraulic fracturing chemical additives and components from the formation. The release of these wastewaters into the environment poses potential risks that are poorly understood. Microbial communities in stream sediments form the base of...
Authors
Adam C. Mumford, Denise M. Akob, J. Grace Klinges, Isabelle M. Cozzarelli

Sperm quality biomarkers complement reproductive and endocrine parameters in investigating environmental contaminants in common carp (Cyprinus carpio) from the Lake Mead National Recreation Area Sperm quality biomarkers complement reproductive and endocrine parameters in investigating environmental contaminants in common carp (Cyprinus carpio) from the Lake Mead National Recreation Area

Lake Mead National Recreational Area (LMNRA) serves as critical habitat for several federally listed species and supplies water for municipal, domestic, and agricultural use in the Southwestern U.S. Contaminant sources and concentrations vary among the sub-basins within LMNRA. To investigate whether exposure to environmental contaminants is associated with alterations in male common carp...
Authors
Jill A. Jenkins, Michael R. Rosen, Rassa O. Dale, Kathy R. Echols, Leticia Torres, Carla M. Wieser, Constance A. Kersten, S. Goodbred

Trends and habitat associations of waterbirds using the South Bay Salt Pond Restoration Project, San Francisco Bay, California Trends and habitat associations of waterbirds using the South Bay Salt Pond Restoration Project, San Francisco Bay, California

Executive Summary The aim of the South Bay Salt Pond Restoration Project (hereinafter “Project”) is to restore 50–90 percent of former salt evaporation ponds to tidal marsh in San Francisco Bay (SFB). However, hundreds of thousands of waterbirds use these ponds over winter and during fall and spring migration. To ensure that existing waterbird populations are supported while tidal marsh...
Authors
Susan E.W. De La Cruz, Lacy M. Smith, Stacy M. Moskal, Cheryl Strong, John Krause, Yiwei Wang, John Y. Takekawa

Plague in a colony of Gunnison's prairie dogs (Cynomys gunnisoni) despite three years of infusions of burrows with 0.05% deltamethrin to kill fleas Plague in a colony of Gunnison's prairie dogs (Cynomys gunnisoni) despite three years of infusions of burrows with 0.05% deltamethrin to kill fleas

At Valles Caldera National Preserve in New Mexico, US, infusing Gunnison's prairie dog (Cynomys gunnisoni) burrows with an insecticide dust containing 0.05% deltamethrin killed fleas which transmit bubonic plague. The reduction in the number of fleas per prairie dog was significant and dramatic immediately after infusions, with a suggestion that the reduction persisted for as long as 12...
Authors
John L. Hoogland, Dean E. Biggins, Nathaniel Blackford, David Eads, Dustin Long, Mariana Rivera Rodriguez, Lauren M. Ross, Sarah Tobey, Emma M. White
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