Skip to main content
U.S. flag

An official website of the United States government

Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42729

Taxonomic evaluation of the Grallaria rufula (Rufous Antpitta) complex (Aves: Passeriformes: Grallariidae) distinguishes sixteen species Taxonomic evaluation of the Grallaria rufula (Rufous Antpitta) complex (Aves: Passeriformes: Grallariidae) distinguishes sixteen species

Populations in the Rufous Antpitta (Grallaria rufula) complex occupy humid montane forests of the Andes from northern Colombia and adjacent Venezuela to central Bolivia. Their tawny to cinnamon-colored plumages are generally uniform, featuring subtle variation in hue and saturation across this range. In contrast to their conservative plumage, substantial vocal differences occur among
Authors
Morton L Isler, Terry Chesser, Mark B Robbins, Andres M Cuervo, C Daniel Cadena, Peter A. Hosner

Conservative plumage masks extraordinary phylogenetic diversity in the Grallaria rufula (Rufous Antpitta) complex of the humid Andes Conservative plumage masks extraordinary phylogenetic diversity in the Grallaria rufula (Rufous Antpitta) complex of the humid Andes

The Grallaria rufula complex is currently considered to consist of 2 species, G. rufula (Rufous Antpitta) and G. blakei (Chestnut Antpitta). However, it has been suggested that the complex, populations of which occur in humid montane forests from Venezuela to Bolivia, comprises a suite of vocally distinct yet morphologically cryptic species. We sequenced nuclear and mitochondrial DNA for...
Authors
Terry Chesser, Morton L Isler, Andres M Cuervo, C Daniel Cadena, Spencer C Galen, Laura M. Bergner, Robert C. Fleischer, Gustavo A Bravo, Daniel F Lane, Peter A. Hosner

Effects of barred owl (Strix varia) removal on population demography of northern spotted owls (Strix occidentalis caurina) in Washington and Oregon—2019 annual report Effects of barred owl (Strix varia) removal on population demography of northern spotted owls (Strix occidentalis caurina) in Washington and Oregon—2019 annual report

Strix occidentalis caurina (northern spotted owl; hereinafter referred to as spotted owl) have rapidly declined throughout the subspecies’ geographic range. Competition with invading Strix varia (barred owl) has been identified as an immediate cause of those declines. A pilot study in California showed that removal of barred owls coupled with conservation of suitable habitat conditions...
Authors
J. David Wiens, Katie M. Dugger, Damon B. Lesmeister, Krista E. Dilione, David C. Simon

Genomic architecture and repertoire of the rainbow trout immunoglobulin light chain genes Genomic architecture and repertoire of the rainbow trout immunoglobulin light chain genes

The genomic loci encoding the four immunoglobulin light chains (IgL1, IgL2, IgL3, and IgL4) in the Swanson trout genome assembly were annotated in order to provide a measurement of the potential IgL repertoire. IgL1 and IgL3 gene segments are co-localized on chromosomes 21, 18, 15, and 7 while IgL2 and IgL4 were found on chromosomes 13 and 17, respectively. In total, 48 constant (CL), 87...
Authors
Katherine Rego, John D. Hansen, Erin S Bromage

A new species of freshwater mussel in the genus Popenaias Frierson, 1927, from the Gulf coastal rivers of central Mexico (Bivalvia: Unionida: Unionidae) with comments on the genus A new species of freshwater mussel in the genus Popenaias Frierson, 1927, from the Gulf coastal rivers of central Mexico (Bivalvia: Unionida: Unionidae) with comments on the genus

The Gulf coastal drainages of central Mexico are a faunal transition zone between North and South America and harbor a unique assemblage of freshwater mussels (Bivalvia: Unionida). However, little information is available regarding the taxonomy, distribution, and evolutionary history of the Mexican mussel fauna due to limited sampling over the last 100 years. To address these knowledge...
Authors
Kentaro Inoue, Kevin S. Cummings, Jeremy S. Tiemann, Thomas D. Miller, Nathan Johnson, Chase H. Smith, Charles R. Randklev

Trends in inland commercial fisheries in the United States Trends in inland commercial fisheries in the United States

Inland fisheries, defined as finfish caught in lakes, rivers, and other water bodies, provide economic value and a source of protein at local and international levels. However, no comprehensive compilation of U.S. inland commercial fisheries exists. We sought to obtain data across all 50 states during 1990–2015 and noted a small, but significant, decline in harvest. The minimum harvest...
Authors
Devin N. Murray, David B. Bunnell, Mark W. Rogers, Abigail Lynch, Beard, Simon Funge-Smith

Tropical understory herbaceous community responds more strongly to hurricane disturbance than to experimental warming Tropical understory herbaceous community responds more strongly to hurricane disturbance than to experimental warming

The effects of climate change on tropical forests may have global consequences due to the forests’ high biodiversity and major role in the global carbon cycle. In this study, we document the effects of experimental warming on the abundance and composition of a tropical forest floor herbaceous plant community in the Luquillo Experimental Forest, Puerto Rico. This study was conducted...
Authors
Deborah K. Kennard, David Matlaga, Joanne Sharpe, Clay C. King, Aura M. Alonso-Rodriguez, Sasha C. Reed, Molly A. Cavaleri, Tana E. Wood

Tests in a semi-natural environment suggest that bait and switch strategy could be used to control invasive Common Carp Tests in a semi-natural environment suggest that bait and switch strategy could be used to control invasive Common Carp

Common Carp (Cyprinus carpio Linnaeus, 1758), is a highly invasive species that has had profound effects on biodiversity and ecosystem services. Many Carp management methods have been applied including physical removal, pesticide treatments of whole lakes, and water drawdowns. Herein, we tested key elements of a potential “bait and switch” approach in which corn could be used to induce...
Authors
Peter J Hundt, Jon Amberg, Blake W. Sauey, Kristen Vacura, Przemyslaw G. Bajer

Avian eggshell thickness in relation to egg morphometrics, embryonic development, and mercury contamination Avian eggshell thickness in relation to egg morphometrics, embryonic development, and mercury contamination

Eggshell thickness is important for physiological, ecological, and ecotoxicological studies on birds; however, empirical eggshell thickness measurements for many species and regions are limited. We measured eggshell thickness at the equator and the egg poles for 12 avian species and related eggshell thickness to egg morphometrics, embryonic development, egg status, and mercury...
Authors
Sarah H. Peterson, Josh T. Ackerman, Mark P. Herzog, Matthew Toney, Breanne Cooney, C. Alex Hartman

Salinity, water level, and forest structure contribute to baldcypress (Taxodium distichum) rhizosphere and endosphere community structure Salinity, water level, and forest structure contribute to baldcypress (Taxodium distichum) rhizosphere and endosphere community structure

As rising sea levels alter coastal ecosystems, there is a pressing need to examine the effects of saltwater intrusion on coastal communities. Using 16S Illumina profiling, we characterized the communities of baldcypress tree (Taxodium distichum) root endosphere and rhizosphere soil bacteria. Our study utilized established sites along salinity and flooding gradients in the United States...
Authors
Candice Y Lumibao, Elizabeth Kimbrough, Steven Formel, Richard Day, Andrew From, William H. Conner, Ken Krauss, Sunshine A Van Bael

Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting

Infectious disease epidemics present a difficult task for policymakers, requiring the implementation of control strategies under significant time constraints and uncertainty. Mathematical models can be used to predict the outcome of control interventions, providing useful information to policymakers in the event of such an epidemic. However, these models suffer in the early stages of an...
Authors
Benjamin D Atkins, Chris P. Jewell, Michael C. Runge, Matthew J. Ferrari, Katriona Shea, William J. M. Probert, Michael J. Tildesley

Biological nitrogen fixation across major biomes in Latin America: Patterns and global change effects Biological nitrogen fixation across major biomes in Latin America: Patterns and global change effects

Biological nitrogen fixation (BNF) supports terrestrial primary productivity and plays key roles in mediating human-induced changes in global nitrogen (N) and carbon cycling. However, there are still critical uncertainties in our understanding of the amount of BNF occurring across terrestrial ecosystems, and of how terrestrial BNF will respond to global change. We synthesized BNF data...
Authors
Carla R. G. Reis, Felipe S. Pacheco, Sasha C. Reed, Graciela Tejada, Gabriela B. Nardoto, Maria C. Forti, Jean Ometto
Was this page helpful?