Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42876
Coastal habitat change and marine megafauna behavior: Florida manatees encountering reduced food provisions in a prominent winter refuge Coastal habitat change and marine megafauna behavior: Florida manatees encountering reduced food provisions in a prominent winter refuge
A decline in submerged aquatic vegetation (SAV) within Florida’s spring-fed thermal refuges raises questions about how these systems support winter foraging of Florida manatees Trichechus manatus latirostris. We analyzed telemetry data for 12 manatees over 7 yr to assess their use of Kings Bay, a winter refuge with diminished SAV. After accounting for the effect of water temperature, we
Authors
Chanda J. Littles, Robert K. Bonde, Susan M. Butler, Charles A. Jacoby, Sky K. Notestein, James P. Reid, Daniel H. Slone, Thomas K. Frazer
The past and future roles of competition and habitat in the range‐wide occupancy dynamics of Northern Spotted Owls The past and future roles of competition and habitat in the range‐wide occupancy dynamics of Northern Spotted Owls
Slow ecological processes challenge conservation. Short‐term variability can obscure the importance of slower processes that may ultimately determine the state of a system. Furthermore, management actions with slow responses can be hard to justify. One response to slow processes is to explicitly concentrate analysis on state dynamics. Here, we focus on identifying drivers of Northern...
Authors
Charles B. Yackulic, Larissa L. Bailey, Katie M. Dugger, Raymond J. Davis, Alan B. Franklin, Eric D. Forsman, Steven H. Ackers, Lawrence S. Andrews, Lowell V. Diller, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Christopher McCafferty, Janice A. Reid, Jeremy T. Rockweit, Stan G. Sovern
Where has turtle ecology been, and where is it going? Where has turtle ecology been, and where is it going?
Over 9000 articles have been published on turtles and tortoises (excluding sea turtles) since 1950 according to the Web of Science, including over 8000 contained in a personal bibliography that we analyze in this paper. Research had a slow start from 1900 to 1950, with mostly anecdotal additions to our knowledge until the contributions of F. Cagle and A. Carr took turtle research to new...
Authors
J. Whitfield Gibbons, Jeffrey E. Lovich
The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout The glycoprotein, non-virion protein, and polymerase of viral hemorrhagic septicemia virus are not determinants of host-specific virulence in rainbow trout
Viral hemorrhagic septicemia virus (VHSV), a fish rhabdovirus belonging to the Novirhabdovirus genus, causes severe disease and mortality in many marine and freshwater fish species worldwide. VHSV isolates are classified into four genotypes and each group is endemic to specific geographic regions in the north Atlantic and Pacific Oceans. Most viruses in the European VHSV genotype Ia are...
Authors
Shamila Yusuff, Gael Kurath, Min Sun Kim, Tarin M Tesfaye, Jie Liu, Douglas Mckenney, Vikram N Vakharia
Modelling sea lice control by lumpfish on Atlantic salmon farms: interactions with mate limitation, temperature, and treatment rules Modelling sea lice control by lumpfish on Atlantic salmon farms: interactions with mate limitation, temperature, and treatment rules
Atlantic salmon farming is one of the largest aquaculture sectors in the world. A major impact on farm economics, fish welfare, and potentially nearby wild salmonid populations, is the sea louse ectoparasite Lepeophtheirus salmonis. Sea louse infestations are most often controlled through application of chemicals, but in most farming regions sea lice have evolved resistance to the small...
Authors
Gregor F. McEwan, Maya L. Groner, Allegra A. B. Cohen, Albert K. D. Imsland, Crawford W. Revie
Not so normal normals: Species distribution model results are sensitive to choice of climate normals and model type Not so normal normals: Species distribution model results are sensitive to choice of climate normals and model type
Species distribution models have many applications in conservation and ecology, and climate data are frequently a key driver of these models. Often, correlative modeling approaches are developed with readily available climate data; however, the impacts of the choice of climate normals is rarely considered. Here, we produced species distribution models for five disparate species using...
Authors
Catherine S. Jarnevich, Nicholas E. Young
Patterns of mercury and selenium exposure in Minnesota common loons Patterns of mercury and selenium exposure in Minnesota common loons
Common loons (Gavia immer) are at risk of elevated dietary mercury (Hg) exposure in portions of their breeding range. To assess the level of risk among loons in Minnesota (USA), we investigated loon blood Hg concentrations in breeding lakes across Minnesota. Loon blood Hg concentrations were regressed on predicted Hg concentrations in standardized 12‐cm whole‐organism yellow perch (Perca
Authors
Kevin P. Kenow, Steven C. Houdek, Luke J. Fara, Richard A. Erickson, Brian R. Gray, Travis J. Harrison, Bruce Monson, Carrol L. Henderson
The area under the precision‐recall curve as a performance metric for rare binary events The area under the precision‐recall curve as a performance metric for rare binary events
Species distribution models are used to study biogeographic patterns and guide decision‐making. The variable quality of these models makes it critical to assess whether a model's outputs are suitable for the intended use, but commonly used evaluation approaches are inappropriate for many ecological contexts. In particular, unrealistically high performance assessments have been associated...
Authors
Helen Sofaer, Jennifer A. Hoeting, Catherine S. Jarnevich
GPS tracking data reveals daily spatio-temporal movement patterns of waterfowl GPS tracking data reveals daily spatio-temporal movement patterns of waterfowl
Background Spatio-temporal patterns of movement can characterize relationships between organisms and their surroundings, and address gaps in our understanding of species ecology, activity budgets, bioenergetics, and habitat resource management. Highly mobile waterfowl, which can exploit resources over large spatial extents, are excellent models to understand relationships between...
Authors
Fiona McDuie, Michael L. Casazza, Cory T. Overton, Mark P. Herzog, C. Alex Hartman, Sarah H. Peterson, Cliff L. Feldheim, Joshua T. Ackerman
Patterns of big sagebrush plant community composition and stand structure in the western United States Patterns of big sagebrush plant community composition and stand structure in the western United States
Big sagebrush (Artemisia tridentata Nutt.) plant communities are found in western North America and comprise a mix of shrubs, forbs, and grasses. Climate, topography, and soil water availability are important factors that shape big sagebrush stand structure and plant community composition; however, most studies have focused on understanding these relationships at sites in a small portion...
Authors
Victoria E. Pennington, John B. Bradford, Kyle A. Palmquist, Rachel R. Renne, William K. Lauenroth
Trends in landbird density at two national parks in fragmented, mixed-use landscapes of the Pacific Northwest Trends in landbird density at two national parks in fragmented, mixed-use landscapes of the Pacific Northwest
National parks play a key role in conserving species by providing landscapes where threats from anthropogenic disturbance are reduced. In a recent study of 3 large wilderness parks in the Pacific Northwest, nearly all landbird species were found to be stable or increasing. Nonetheless, contemporary results from the Breeding Bird Survey and mark-recapture studies fuel concerns that some...
Authors
Chris Ray, Mandy Holmgren, Robert L. Wilkerson, Rodney B. Siegel, John R. Boetsch, Kurt J. Jenkins, Jason I. Ransom
Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast Influenza A prevalence and subtype diversity in migrating teal sampled along the United States Gulf Coast
Wild birds in the order Anseriformes are important reservoirs for influenza A viruses (IAV); however, IAV prevalence and subtype diversity may vary by season, even at the same location. To better understand the ecology of IAV during waterfowl migration through the Gulf Coast of the United States (Louisiana and Texas), surveillance of blue-winged (Spatula discors) and American green...
Authors
Deborah Carter, Paul T. Link, Patrick Walther, Andrew M. Ramey, David E. Stallknecht, Rebecca L. Poulson