Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42871
Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis Acquisition and dissemination of cephalosporin-resistant E. coli in migratory birds sampled at an Alaska landfill as inferred through genomic analysis
Antimicrobial resistance (AMR) in bacterial pathogens threatens global health, though the spread of AMR bacteria and AMR genes between humans, animals, and the environment is still largely unknown. Here, we investigated the role of wild birds in the epidemiology of AMR Escherichia coli. Using next-generation sequencing, we characterized cephalosporin-resistant E. coli cultured from...
Authors
Christina Ann Ahlstrom, Jonas Bonnedahl, Hanna Woksepp, Jorge Hernandez, Olsen Bjorn, Andrew M. Ramey
Leaf to landscape responses of giant sequoia to hotter drought: An introduction and synthesis for the special section Leaf to landscape responses of giant sequoia to hotter drought: An introduction and synthesis for the special section
Hotter droughts are becoming more common as climate change progresses, and they may already have caused instances of forest dieback on all forested continents. Learning from hotter droughts, including where on the landscape forests are more or less vulnerable to these events, is critical to help resource managers proactively prepare for the future. As part of our Leaf to Landscape...
Authors
Koren R. Nydick, Nathan L. Stephenson, Anthony R. Ambrose, Gregory P. Asner, Wendy L. Baxter, Adrian J. Das, Todd E. Dawson, Roberta E. Martin, Tarin Paz-Kagan
A snow density dataset for improving surface boundary conditions in Greenland ice sheet firn modeling A snow density dataset for improving surface boundary conditions in Greenland ice sheet firn modeling
The surface snow density of glaciers and ice sheets is of fundamental importance in converting volume to mass in both altimetry and surface mass balance studies, yet it is often poorly constrained. Site-specific surface snow densities are typically derived from empirical relations based on temperature and wind speed. These parameterizations commonly calculate the average density of the...
Authors
Robert Fausto, Jason E. Box, Baptiste Vandecrux, Dirk van As, Konrad Steffen, Michael J. MacFerrin, Horst Machguth, William Colgan, Daniel Mcgrath, Lora S. Koenig, Charalampos Charalampidis, Roger J. Braithwaite
Separable correlation and maximum likelihood Separable correlation and maximum likelihood
We consider estimation of the covariance matrix of a multivariate normal distribution when the correlation matrix is separable in the sense that it factors as a Kronecker product of two smaller matrices. A computationally convenient coordinate descent-type algorithm is developed for maximum likelihood estimation. Simulations indicate our method often gives smaller estimation error than...
Authors
Karl Oskar Ekvall, Brian R. Gray
Effects of brine contamination from energy development on wetland macroinvertebrate community structure in the Prairie Pothole Region Effects of brine contamination from energy development on wetland macroinvertebrate community structure in the Prairie Pothole Region
Wetlands in the Prairie Pothole Region (PPR) of North America support macroinvertebrate communities that are integral to local food webs and important to breeding waterfowl. Macroinvertebrates in PPR wetlands are primarily generalists and well adapted to within and among year changes in water permanence and salinity. The Williston Basin, a major source of U.S. energy production...
Authors
Todd M. Preston, Michael J. Borgreen, Andrew M. Ray
A tale of two wildfires; testing detection and prediction of invasive species distributions using models fit with topographic and spectral indices A tale of two wildfires; testing detection and prediction of invasive species distributions using models fit with topographic and spectral indices
Context Developing species distribution models (SDMs) to detect invasive species cover and evaluate habitat suitability are high priorities for land managers. Objectives We tested SDMs fit with different variable combinations to provide guidelines for future invasive species model development based on transferability between landscapes. Methods Generalized linear model, boosted...
Authors
Amanda M. West, Paul H. Evangelista, Catherine S. Jarnevich, Darin Shulte
Stream fish colonization but not persistence varies regionally across a large North American river basin Stream fish colonization but not persistence varies regionally across a large North American river basin
Many species have distributions that span distinctly different physiographic regions, and effective conservation of such taxa will require a full accounting of all factors that potentially influence populations. Ecologists recognize effects of physiographic differences in topography, geology and climate on local habitat configurations, and thus the relevance of landscape heterogeneity to...
Authors
Kit Wheeler, Seth J. Wenger, Stephen J. Walsh, Zachary P. Martin, Howard L. Jelks, Mary Freeman
Quarterly wildlife mortality report April 2018 Quarterly wildlife mortality report April 2018
No abstract available.
Authors
Bryan J. Richards, Barbara L. Bodenstein, Anne Ballmann, C. LeAnn White
Characterization of Plasmodium relictum, a cosmopolitan agent of avian malaria Characterization of Plasmodium relictum, a cosmopolitan agent of avian malaria
Background Microscopic research has shown that Plasmodium relictum is the most common agent of avian malaria. Recent molecular studies confirmed this conclusion and identified several mtDNA lineages, suggesting the existence of significant intra-species genetic variation or cryptic speciation. Most identified lineages have a broad range of hosts and geographical distribution. Here, a...
Authors
Gediminas Valkiunas, Mikas Ilgunas, Dovile Bukauskaite, Karin Fragner, Herbert Weissenbock, Carter T. Atkinson, Tatjana Iezhova
Ecological and management implications of climate change induced shifts in phenology of coastal fish and wildlife species in the Northeast CASC region Ecological and management implications of climate change induced shifts in phenology of coastal fish and wildlife species in the Northeast CASC region
Climate change is causing species to shift their phenology, or the timing of recurring life events such as migration and reproduction, in variable and complex ways. This can potentially result in mismatches or asynchronies in food and habitat resources that negatively impact individual fitness, population dynamics, and ecosystem function. Numerous studies have evaluated phenological...
Authors
Michelle D. Staudinger, Adrian Jordaan
Plant and microbial biomarkers suggest mechanisms of soil organic carbon accumulation in a Mojave Desert ecosystem under elevated CO2 Plant and microbial biomarkers suggest mechanisms of soil organic carbon accumulation in a Mojave Desert ecosystem under elevated CO2
We investigated how properties of soil organic matter (SOM) were altered after 10 years exposure to elevated atmospheric CO2 concentration ([CO2]) in a Mojave Desert ecosystem, using plant and microbial biomarkers. We focused on roles of Larrea tridentata, the dominant evergreen shrub which form islands of fertility, and biological soil crusts which have extensive cover in plant...
Authors
Akihiro Koyama, Benjamin Harlow, Cheryl R. Kuske, Jayne Belnap, R. Dave Evans
Spatial distribution of estuarine diamond-backed terrapins (Malaclemys terrapin) and risk analysis from commercial blue crab (Callinectes sapidus) trapping at the Savannah Coastal Refuges Complex, USA Spatial distribution of estuarine diamond-backed terrapins (Malaclemys terrapin) and risk analysis from commercial blue crab (Callinectes sapidus) trapping at the Savannah Coastal Refuges Complex, USA
The diamond-backed terrapin (Malaclemys terrapin) is a small estuarine turtle distributed along the Atlantic and Gulf Coasts of the USA. Terrapin populations are declining throughout their range and one of the main causes is mortality by drowning as bycatch in commercially-fished blue crab (Callinetes sapidus) traps (aka pots). We conducted head counts of terrapins and documented the...
Authors
Jeffrey E. Lovich, Meagan Thomas, Kirsten E. Ironside, Charles B. Yackulic, Shellie R. Puffer