Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 43050
Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination Marmots do not drink coffee: Human urine contributions to the nitrogen budget of a popular national park destination
Reactive nitrogen (Nr) concentrations are higher than expected for mountain lakes in Rocky Mountain National Park, and for many years, high Nr concentrations have been attributed to atmospheric Nr deposition from regional and more distant emission sources, including combustion of fossil fuels and agricultural activities. Here, we estimated the contribution from a very local source, that...
Authors
Jill Baron, Timothy Weinmann, Varun Kirk Acharya, Caitlin Charlton, Koren Nydick, Scott Esser
Management of vampire bats and rabies: Past, present, and future Management of vampire bats and rabies: Past, present, and future
Rabies virus transmitted via the bite of common vampire bats (Desmodus rotundus) has surpassed canine-associated cases as the predominant cause of human rabies in Latin America. Cattle, the preferred prey of D. rotundus, suffer extensive mortality from vampire bat associated rabies, with annual financial losses estimated in the tens of millions of dollars. Organized attempts to manage or...
Authors
Tonie E. Rocke, Daniel G. Streicker, Ariel Elizabeth Leon
The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration The concept of land bridge marshes in the Mississippi River Delta and implications for coastal restoration
Louisiana has high coastal wetland loss rates due to natural processes such as subsidence and anthropogenic activities such as construction of river levees and dams, pervasive alteration of surface hydrology by local industries such as oil and gas, and navigation. With the exception of the Atchafalaya River discharge area, most of Louisiana's marsh coastline is retreating and coastal...
Authors
John W. Day, Robert R. Twilley, Angelina Freeman, Brady Couvillion, Tracy Quirk, Navid H. Jafari, Giulio Mariotti, Rachael Hunter, Charles Norman, G. Paul Kemp, John R. White, Ehab Meselhe
Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates Inland water greenhouse gas budgets for RECCAP2: 2. Regionalization and homogenization of estimates
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we synthesize existing estimates of GHG emissions from streams, rivers, lakes and reservoirs, and homogenize them with regard to...
Authors
Ronny Lauerwald, George H. Allen, Bridget R. Deemer, Shaoda Liu, Taylor Maavara, Peter Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments Inland water greenhouse gas budgets for RECCAP2: 1. State-of-the-art of global scale assessments
Inland waters are important sources of the greenhouse gasses (GHGs) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) to the atmosphere. In the framework of the 2nd phase of the REgional Carbon Cycle Assessment and Processes (RECCAP-2) initiative, we review the state of the art in estimating inland water GHG budgets at global scale, which has substantially advanced since the...
Authors
Ronny Lauerwald, George H. Allen, Bridget R. Deemer, Shaoda Liu, Taylor Maavara, Peter Raymond, Lewis Alcott, David Bastviken, Adam Hastie, Meredith A. Holgerson, Matthew S. Johnson, Bernhard Lehner, Peirong Lin, Alessandra Marzadri, Lishan Ran, Hanqin Tian, Xiao Yang, Yuanzhi Yao, Pierre Regnier
Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2022 data summary
Executive Summary We surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along the upper San Luis Rey River near Lake Henshaw in Santa Ysabel, California, in 2022. Surveys were completed at four locations: three downstream from Lake Henshaw, where surveys occurred from 2015 to 2021 (Rey River Ranch [RRR], Cleveland National Forest [CNF], Vista Irrigation...
Authors
Scarlett L. Howell, Barbara E. Kus
Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death Ambrosia beetles (Coleoptera: Curculionidae) can directly transmit the fungal pathogens responsible for Rapid ʻŌhiʻa Death
The ecologically and culturally vital tree species, ʻōhiʻa lehua (Metrosideros polymorpha), is threatened by the fungal pathogens Ceratocystis lukuohia and Ceratocystis huliohia, the causal agents of the disease complex called Rapid ʻŌhiʻa Death (ROD). Four invasive ambrosia beetle (Coleoptera: Curculionidae: Scolytinae) species in the Xyleborini tribe colonize ROD Ceratocystis-infested...
Authors
Kylle Roy, Kelly Jaenecke, Ellen J. Dunkle, Dan Mikros, Robert W. Peck
A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida) A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida)
The proliferation of genomic sequencing approaches has significantly impacted the field of phylogenetics. Target capture approaches provide a cost-effective, fast and easily applied strategy for phylogenetic inference of non-model organisms. However, several existing target capture processing pipelines are incapable of incorporating whole genome sequencing (WGS). Here, we develop a new...
Authors
André Gomes-dos-Santos, Elsa Froufe, John M. Pfeiffer, Nathan Johnson, Chase H. Smith, Andre M. Machado, L. Filipe C. Castro, Van Tu Do, Akimasa Hattori, Nicole Garrison, Nathan V. Whelan, Ivan N. Bolotov, Ilya V. Vikhrev, Alexander V. Kondakov, Mohamed Ghamizi, Vincent Prie, Arthur E. Bogan, Manuel Lopes Lima
Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia Exploring the relevance of the multidimensionality of wildlife recreationists to conservation behaviors: A case study in Virginia
Wildlife recreationists' participation in conservation behaviors could provide key support to the conservation efforts of state fish and wildlife agencies. However, little is known about how identifying with multiple forms of wildlife recreation (i.e., hunters, anglers, birders, wildlife viewers) may influence participation in conservation behaviors, specifically for supporting state...
Authors
Bennett Grooms, Ashley A. Dayer, Jessica Barnes, Ashley Peele, Jonathan D. Rutter, Nicholas W. Cole
Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape Estimating the impact of climate and vegetation changes on runoff risk across the Hawaiian landscape
In Hawai’i, ecosystem conservation practitioners are increasingly considering the potential ecohydrological benefits from applied conservation action to mitigate the degrading impacts of runoff on native and restored ecosystems. One determinant of runoff is excess rainfall events where rainfall rates exceed the infiltration capacity of soils. To help understand runoff risks, we...
Authors
Lucas Berio Fortini, Lauren R. Kaiser, Kimberlie Perkins, Lulin Xue, Yaping Wang
The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios The energy–water limitation threshold explains divergent drought responses in tree growth, needle length, and stable isotope ratios
Predicted increases in extreme droughts will likely cause major shifts in carbon sequestration and forest composition. Although growth declines during drought are widely documented, an increasing number of studies have reported both positive and negative responses to the same drought. These divergent growth patterns may reflect thresholds (i.e., nonlinear responses) promoted by changes...
Authors
Joan Dudney, Andrew M. Latimer, Phillip J. van Mantgem, Harold S. Zald, Claire E Willing, Jonathan Nesmith, Jennifer E Cribbs, Elizabeth R. Milano
Quantifying uncertainty in coastal salinity regime for biological application using quantile regression Quantifying uncertainty in coastal salinity regime for biological application using quantile regression
Salinity regimes in coastal ecosystems are highly dynamic and driven by complex geomorphic and hydrological processes. Estuarine biota are generally adapted to salinity fluctuation, but are vulnerable to salinity extremes. Characterizing coastal salinity regime for ecological studies therefore requires representing extremes of salinity ranges at time scales relevant to ecology (e.g...
Authors
Simeon Yurek, Micheal S Allen, Mitchell J. Eaton, David Chagaris, Nathan Reaver, Julien Martin, Peter C Frederick, Mark Dehaven