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Browse more than 65,000 articles authored by our scientists over the past 100+ year history of the USGS and refine search by topic, location, year, and advanced search.

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Evaluating sources of bias in pedigree-based estimates of breeding population size Evaluating sources of bias in pedigree-based estimates of breeding population size

Applications of genetic-based estimates of population size are expanding, especially for species for which traditional demographic estimation methods are intractable due to the rarity of adult encounters. Estimates of breeding population size (NS) are particularly amenable to genetic-based approaches as the parameter can be estimated using pedigrees reconstructed from genetic data...
Authors
Shannon L. White, Nicholas M Sard, Harold M Brundage III, Robin L. Johnson, Barbara A. Lubinski, Michael S. Eackles, Ian A Park, Dewayne A. Fox, David C. Kazyak

Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience

Decision-makers in inland fisheries management must balance ecologically and socially palatable objectives for ecosystem services within financial or physical constraints. Climate change has transformed the potential range of ecosystem services available. The Resist-Accept-Direct (RAD) framework offers a foundation for responding to climate-induced ecosystem modification; however...
Authors
Zachary S. Feiner, Aaron D. Shultz, Greg G. Sass, Ashley Trudeau, Matthew G. Mitro, Colin J. Dassow, Alexander W. Latzka, Daniel A. Isermann, Bryan M. Maitland, Jared Joseph Homola, Holly Susan Embke, Michael Preul

Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach

1. Large-scale, long-term biodiversity monitoring is essential to conservation, land management, and identifying threats to biodiversity. However, multispecies surveys are prone to various types of observation error, including false positive/negative detection, and misclassification, where a species is thought to have been encountered but not correctly identified. Previous methods assume...
Authors
Anna Spiers, J. Andrew Royle, Christa Torrens, Maxwell Joseph

Reevaluation of the role of blocked Oropsylla hirsuta prairie dog fleas (Siphonaptera: Ceratophyllidae) in Yersinia pestis (Enterobacterales: Enterobacteriaceae) transmission Reevaluation of the role of blocked Oropsylla hirsuta prairie dog fleas (Siphonaptera: Ceratophyllidae) in Yersinia pestis (Enterobacterales: Enterobacteriaceae) transmission

Prairie dogs in the western United States experience periodic epizootics of plague, caused by the flea-borne bacterial pathogen Yersinia pestis. An early study indicated that Oropsylla hirsuta (Baker), often the most abundant prairie dog flea vector of plague, seldom transmits Y. pestis by the classic blocked flea mechanism. More recently, an alternative early-phase mode of transmission...
Authors
Adelaide Miarinjara, David A. Eads, David M. Bland, Marc R. Matchett, Dean E. Biggins, B. Joseph Hinnebusch

Microbially induced anaerobic oxidation of magnetite to maghemite in a hydrocarbon-contaminated aquifer Microbially induced anaerobic oxidation of magnetite to maghemite in a hydrocarbon-contaminated aquifer

Iron mineral transformations occurring in hydrocarbon-contaminated sites are linked to the biodegradation of the hydrocarbons. At a hydrocarbon-contaminated site near Bemidji, Minnesota, USA, measurements of magnetic susceptibility (MS) are useful for monitoring the natural attenuation of hydrocarbons related to iron cycling. However, a transient MS, previously observed at the site...
Authors
Leonard O. Ohenhen, Joshua M. Feinberg, Lee Slater, Dimitrios Ntarlagiannis, Isabelle M. Cozzarelli, Miriam Rios-Sanchez, Carl W. Isaacson, Alexis Stricker, Estella A. Atekwana

Environmental filtering controls soil biodiversity in wet tropical ecosystems Environmental filtering controls soil biodiversity in wet tropical ecosystems

The environmental factors controlling soil biodiversity along resource gradients remain poorly understood in wet tropical ecosystems. Aboveground biodiversity is expected to be driven by changes in nutrient availability in these ecosystems, however, much less is known about the importance of nutrient availability in driving soil biodiversity. Here, we combined a cross-continental soil...
Authors
Haiying Cui, Peter M. Vitousek, Sasha C. Reed, Wei Sun, Blessing Sokoya, Adebola R. Bamigboye, Jay Prakash Verma, Arpan Mukherjee, Gabriel F. Penaloza-Bojaca, Alberto L. Teixido, Pankaj Trivedi, Ji-Zheng He, Hang-Wei Hu, Kenny Png, Manuel Delgado-Baquerizo

Insights into the geometry and evolution of the southern San Andreas Fault from geophysical data, southern California Insights into the geometry and evolution of the southern San Andreas Fault from geophysical data, southern California

Two new joint gravity-magnetic models in northern Coachella Valley provide additional evidence for a steep northeast dip of the Mission Creek strand of the southern San Andreas fault (southern California, USA). Gravity modeling indicates a steep northeast dip of the Banning fault in the upper 1–2 km in northern Coachella Valley. The Mission Creek strand and its continuation to the...
Authors
Victoria Langenheim, Gary S. Fuis

Modeling the impact of invasive species litter on conditions affecting its spread and potential regime shift Modeling the impact of invasive species litter on conditions affecting its spread and potential regime shift

Many introduced plants pose invasion risks globally and threaten the biodiversity of native ecosystems. Such non-native plants can become invasive when they have advantages over native plants, such as having fewer natural enemies. Invasive plants often have the ability to alter ecosystem properties after they have become established, which can make it difficult to eliminate the invasive...
Authors
Yuanming Lu, Donald L. DeAngelis, Junfei Xia, Jiang Jiang

Space use and site fidelity of wintering whooping cranes on the Texas Gulf Coast Space use and site fidelity of wintering whooping cranes on the Texas Gulf Coast

The Aransas-Wood Buffalo population (the only non-reintroduced, migratory population) of endangered whooping cranes (Grus americana) overwinters along the Texas Gulf Coast, USA. Understanding whooping crane space use on the wintering grounds reveals essential aspects of this species' ecology, which subsequently assists with conservation. Using global positioning system telemetry data...
Authors
Matthew J Butler, David R. Stewart, Grant M Harris, Mark T. Bidwell, Aaron T. Pearse

Increased attack rates and decreased incubation periods in raccoons with chronic wasting disease passaged through meadow voles Increased attack rates and decreased incubation periods in raccoons with chronic wasting disease passaged through meadow voles

Chronic wasting disease (CWD) is a naturally-occurring neurodegenerative disease of cervids. Raccoons (Procyon lotor) and meadow voles (Microtus pennsylvanicus) have previously been shown to be susceptible to the CWD agent. To investigate the potential for transmission of the agent of CWD from white-tailed deer to voles and subsequently to raccoons, we intracranially inoculated raccoons...
Authors
S. Jo Moore, Christina M. Carlson, Jay R. Schneider, Christopher J. Johnson, Justin J. Greenlee

A geomorphic-process-based cellular automata model of colluvial wedge morphology and stratigraphy A geomorphic-process-based cellular automata model of colluvial wedge morphology and stratigraphy

The development of colluvial wedges at the base of fault scarps following normal-faulting earthquakes serves as a sedimentary record of paleoearthquakes and is thus crucial in assessing seismic hazard. Although there is a large body of observations of colluvial wedge development, connecting this knowledge to the physics of sediment transport can open new frontiers in our understanding...
Authors
Harrison J. Gray, Christopher B. DuRoss, Sylvia Nicovich, Ryan D. Gold

Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events Avian-associated Aspergillus fumigatus displays broad phylogenetic distribution, no evidence for host specificity, and multiple genotypes within epizootic events

Birds are highly susceptible to aspergillosis, which can manifest as a primary infection in both domestic and wild birds. Aspergillosis in wild birds causes mortalities ranging in scale from single animals to large-scale epizootic events. However, pathogenicity factors associated with aspergillosis in wild birds have not been examined. Specifically, it is unknown whether wild bird...
Authors
Lotus A. Lofgren, Jeffrey M. Lorch, Robert A. Cramer, David S. Blehert, Brenda M. Berlowski-Zier, Megan Winzeler, Cecilia Gutierrez-Perez, Nicole E. Kordana, Jason E. Stajich
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