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Publications

Find out more about Biological Threat and Invasive Species Research through our publications.

Filter Total Items: 305

Decision-making for foot-and-mouth disease control: Objectives matter

Formal decision-analytic methods can be used to frame disease control problems, the first step of which is to define a clear and specific objective. We demonstrate the imperative of framing clearly-defined management objectives in finding optimal control actions for control of disease outbreaks. We illustrate an analysis that can be applied rapidly at the start of an outbreak when there are multip
Authors
William J. M. Probert, Katriona Shea, Christopher J. Fonnesbeck, Michael C. Runge, Tim E. Carpenter, Salome Durr, M. Graeme Garner, Neil Harvey, Mark A. Stevenson, Colleen T. Webb, Marleen Werkman, Michael J. Tildesley, Matthew J. Ferrari

Taxonomy of the order Mononegavirales: update 2016

In 2016, the order Mononegavirales was emended through the addition of two new families (Mymonaviridae and Sunviridae), the elevation of the paramyxoviral subfamily Pneumovirinae to family status (Pneumoviridae), the addition of five free-floating genera (Anphevirus, Arlivirus, Chengtivirus, Crustavirus, and Wastrivirus), and several other changes at the genus and species levels. This article pres
Authors
C.L. Afonso, Gael Kurath, 82 Additional Authors

Disease prevalence and snail predation associated with swell-generated damage on the threatened coral, Acropora palmata (Lamarck)

Disturbances such as tropical storms cause coral mortality and reduce coral cover as a direct result of physical damage. Storms can be one of the most important disturbances in coral reef ecosystems, and it is crucial to understand their long-term impacts on coral populations. The primary objective of this study was to determine trends in disease prevalence and snail predation on damaged and undam
Authors
Allan J. Bright, Caroline S. Rogers, Marilyn E. Brandt, Erinn Muller, Tyler B. Smith

Emerging coral diseases in Kāne'ohe Bay, O'ahu, Hawai'i (USA): two major disease outbreaks of acute Montipora white syndrome

In March 2010 and January 2012, we documented 2 widespread and severe coral disease outbreaks on reefs throughout Kāne‘ohe Bay, Hawai‘i (USA). The disease, acute Montipora white syndrome (aMWS), manifested as acute and progressive tissue loss on the common reef coral M. capitata. Rapid visual surveys in 2010 revealed 338 aMWS-affected M. capitata colonies with a disease abundance of (mean ± SE) 0.
Authors
Greta S. Aeby, Sean Callahan, Evelyn F. Cox, Christina M. Runyon, Ashley Smith, Frank G. Stanton, Blake Ushijima, Thierry M. Work

Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock

Whole-genome sequencing has provided fundamental insights into infectious disease epidemiology, but has rarely been used for examining transmission dynamics of a bacterial pathogen in wildlife. In the Greater Yellowstone Ecosystem (GYE), outbreaks of brucellosis have increased in cattle along with rising seroprevalence in elk. Here we use a genomic approach to examine Brucella abortus evolution, c
Authors
Pauline L. Kamath, Jeffrey T. Foster, Kevin P. Drees, Gordon Luikart, Christine Quance, Neil J. Anderson, P. Ryan Clarke, Eric Cole, Mark L. Drew, William H. Edwards, Jack C. Rhyan, John J. Treanor, Rick L. Wallen, Patrick J. White, Suelee Robbe-Austerman, Paul C. Cross

Carbon dioxide as a tool to deter the movement of invasive bigheaded carps

Nonnative bigheaded carps are established in the Mississippi River and there is substantial concern about their potential entry into the interconnected Laurentian Great Lakes. While electrical barriers currently exist as a preventative measure, there is need for additional control mechanisms to promote barrier security through redundancy. We tested the effectiveness of infused carbon dioxide gas (
Authors
Michael R. Donaldson, Jon Amberg, Shivani Adhikari, Aaron R. Cupp, Nathan Jensen, Jason G. Romine, Adam Wright, Mark P. Gaikowski, Cory D. Suski

Host contact and shedding patterns clarify variation in pathogen exposure and transmission in threatened tortoise Gopherus agassizii: implications for disease modelling and management

Summary Most directly transmitted infections require some form of close contact between infectious and susceptible hosts to spread. Often disease models assume contacts are equal and use mean field estimates of transmission probability for all interactions with infectious hosts. Such methods may inaccurately describe transmission when interactions differ substantially in their ability to cause in
Authors
Christina M. Aiello, Kenneth E. Nussear, Todd C. Esque, Patrick G. Emblidge, Pratha Sah, Shweta Bansal, Peter J. Hudson

Recommended reporting standards for test accuracy studies of infectious diseases of finfish, amphibians, molluscs and crustaceans: the STRADAS-aquatic checklist

Complete and transparent reporting of key elements of diagnostic accuracy studies for infectious diseases in cultured and wild aquatic animals benefits end-users of these tests, enabling the rational design of surveillance programs, the assessment of test results from clinical cases and comparisons of diagnostic test performance. Based on deficiencies in the Standards for Reporting of Diagnostic A
Authors
Ian A Gardner, Richard J Whittington, Charles G B Caraguel, Paul Hick, Nicholas J G Moody, Serge Corbeil, Kyle A. Garver, Janet V. Warg, Isabelle Arzul, Maureen K. Purcell, Mark St. J. Crane, Thomas B. Waltzek, Niels J Olesen, Alicia Gallardo Lagno

Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus)

Newcastle disease is caused by virulent forms of avian paramyxovirus of serotype 1 (APMV-1) and has global economic importance. The disease reached panzootic proportions within two decades after first being identified in 1926 in the United Kingdom and Indonesia and still remains endemic in many countries across the world. Here we review information on the host, temporal, and geographic distributio
Authors
Kiril M. Dimitrov, Andrew M. Ramey, Xueting Qiu, Justin Bahl, Claudio L. Afonso

Contact heterogeneities in feral swine: implications for disease management and future research

Contact rates vary widely among individuals in socially structured wildlife populations. Understanding the interplay of factors responsible for this variation is essential for planning effective disease management. Feral swine (Sus scrofa) are a socially structured species which pose an increasing threat to livestock and human health, and little is known about contact structure. We analyzed 11 GPS
Authors
Kim Pepin, Amy J. Davis, James Beasley, Raoul Boughton, Tyler Campbell, Susan Cooper, Wes Gaston, Stephen B. Hartley, John C. Kilgo, Samantha Wisely, Christy Wyckoff, Kurt VerCauteren

Complementary approaches to diagnosing marine diseases: a union of the modern and the classic

Linking marine epizootics to a specific aetiology is notoriously difficult. Recent diagnostic successes show that marine disease diagnosis requires both modern, cutting-edge technology (e.g. metagenomics, quantitative real-time PCR) and more classic methods (e.g. transect surveys, histopathology and cell culture). Here, we discuss how this combination of traditional and modern approaches is necess
Authors
Colleen A. Burge, Carolyn S. Friedman, Rodman G. Getchell, Marcia House, Kevin D. Lafferty, Laura D. Mydlarz, Katherine C. Prager, Kathryn P. Sutherland, Tristan Renault, Ikunari Kiryu, Rebecca Vega-Thurber

First documented case of snake fungal disease in a free-ranging wild snake in Louisiana

Snake fungal disease (SFD) is a recently documented mycotic disease characterized by scabs or crusty scales, subcutaneous nodules, abnormal molting, cloudiness of the eyes (not associated with molting), and localized thickening or crusting of the skin. SFD has been documented in many species in the Eastern and Midwestern United States within the last decade. SFD has proven lethal in many snakes, a
Authors
Brad M. Glorioso, J. Hardin Waddle, David E. Green, Jeffrey M. Lorch