Fish & Wildlife Disease: Avian Disease
The USGS conducts ongoing surveillance and research nationwide on avian diseases that could be harmful to domestic animals and humans.
Avian Influenza
Since 2006, we have partnered with agencies around the world to monitor the spread of highly pathogenic (HPAI) avian influenza. In 2014, our scientists detected three HPAI viruses for the first time in wild birds in North America: H5N2, H5N8, and a recombinant H5N1. In response to HPAI detections, our scientists are working closely with the U.S. Department of Agriculture and other Federal and state agency partners.
Learn more about USGS avian influenza science >>
Avian Malaria
Avian malaria is a mosquito-borne bird disease caused by a protozoan parasite (Plasmodium relictum). P. relictum reproduces in avian red blood cells. If the parasite load is sufficiently high, the bird loses red blood cells (anemia). Because red blood cells are critical for moving oxygen about the body, loss of these cells can lead to progressive weakness and, eventually, death. This disease was introduced to Hawaii and native honeycreepers are highly susceptible.
Avian Botulism
Avian botulism is caused by the soil bacterium, Clostridium botulinum, and causes paralysis and death in birds. Two types of botulism have been found in birds: Type C, which occurs during warmer months across the U.S., and Type E, which is found primarily in the Great Lakes.
Birds can become infected with botulism after ingesting decaying organic matter or live invertebrates that have been infected with the toxin.
USGS scientists study avian botulism on microscopic and geographic scales to answer questions about how the botulism toxin spreads through the food chain, how botulism can be controlled, and where botulism outbreaks may occur next.
Avian Disease Research
Disease Ecology In the Pacific Basin: Wildlife and Public Health Concerns
Recent data related to USGS avian disease research is listed below. A complete listing of USGS avian disease data is available from the button below.
Hawaiian forest bird avian malaria prevalence 2018-2021 Hawaiian forest bird avian malaria prevalence 2018-2021
Data showing similar movement ecology between mallards infected and not infected with highly pathogenic avian influenza H5N1 Data showing similar movement ecology between mallards infected and not infected with highly pathogenic avian influenza H5N1
Epidemiologic and diagnostic data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) with highly pathogenic avian influenza H5N1 submitted to the USGS National Wildlife Health Center in 2022 Epidemiologic and diagnostic data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) with highly pathogenic avian influenza H5N1 submitted to the USGS National Wildlife Health Center in 2022
Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology” Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”
Predicted H5 and H7 subtype Avian Influenza Prevalence for Wild Waterfowl Species Across the Continental United States Predicted H5 and H7 subtype Avian Influenza Prevalence for Wild Waterfowl Species Across the Continental United States
Data describing infection status and movement ecology of North American waterfowl Data describing infection status and movement ecology of North American waterfowl
Spatial models indicating avian influenza transmission risk at the interface of domestic poultry and wild birds in China Spatial models indicating avian influenza transmission risk at the interface of domestic poultry and wild birds in China
Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl
Weekly estimates of the risk of avian influenza transmission from wild waterfowl to domestic poultry - Initial phase models Weekly estimates of the risk of avian influenza transmission from wild waterfowl to domestic poultry - Initial phase models
Relative susceptibility of poultry to the transmission of Avian Influenza from wild birds based upon poultry type and density Relative susceptibility of poultry to the transmission of Avian Influenza from wild birds based upon poultry type and density
Telemetry data of a Lesser Scaup (Aythya affinis) positive for 2.3.4.4 Highly Pathogenic H5N1 Telemetry data of a Lesser Scaup (Aythya affinis) positive for 2.3.4.4 Highly Pathogenic H5N1
Spatial Models of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission Spatial Models of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission
Recent publications related to USGS avian disease research are listed below. A complete listing of USGS avian disease publications is available from the button below.
Avian botulism case definition for wildlife Avian botulism case definition for wildlife
Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk
Contrasting migratory chronology and routes of Lesser Scaup: Implications of different migration strategies in a broadly distributed species Contrasting migratory chronology and routes of Lesser Scaup: Implications of different migration strategies in a broadly distributed species
Highly pathogenic avian influenza A(H5N1) virus clade 2.3.4.4b infections in wild terrestrial mammals, United States, 2022 Highly pathogenic avian influenza A(H5N1) virus clade 2.3.4.4b infections in wild terrestrial mammals, United States, 2022
Climate change impacts on bird migration and highly pathogenic avian influenza Climate change impacts on bird migration and highly pathogenic avian influenza
Environmental surveillance and detection of infectious highly pathogenic avian influenza virus in Iowa wetlands Environmental surveillance and detection of infectious highly pathogenic avian influenza virus in Iowa wetlands
Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska
High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie) High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie)
Avian malaria and the extinction of Hawaiian forest birds Avian malaria and the extinction of Hawaiian forest birds
Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria
Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria-resistant introduced birds Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria-resistant introduced birds
Avian influenza antibody prevalence increases with mercury contamination in wild waterfowl Avian influenza antibody prevalence increases with mercury contamination in wild waterfowl
Explore our science using the interactive tools below.
The USGS conducts ongoing surveillance and research nationwide on avian diseases that could be harmful to domestic animals and humans.
Avian Influenza
Since 2006, we have partnered with agencies around the world to monitor the spread of highly pathogenic (HPAI) avian influenza. In 2014, our scientists detected three HPAI viruses for the first time in wild birds in North America: H5N2, H5N8, and a recombinant H5N1. In response to HPAI detections, our scientists are working closely with the U.S. Department of Agriculture and other Federal and state agency partners.
Learn more about USGS avian influenza science >>
Avian Malaria
Avian malaria is a mosquito-borne bird disease caused by a protozoan parasite (Plasmodium relictum). P. relictum reproduces in avian red blood cells. If the parasite load is sufficiently high, the bird loses red blood cells (anemia). Because red blood cells are critical for moving oxygen about the body, loss of these cells can lead to progressive weakness and, eventually, death. This disease was introduced to Hawaii and native honeycreepers are highly susceptible.
Avian Botulism
Avian botulism is caused by the soil bacterium, Clostridium botulinum, and causes paralysis and death in birds. Two types of botulism have been found in birds: Type C, which occurs during warmer months across the U.S., and Type E, which is found primarily in the Great Lakes.
Birds can become infected with botulism after ingesting decaying organic matter or live invertebrates that have been infected with the toxin.
USGS scientists study avian botulism on microscopic and geographic scales to answer questions about how the botulism toxin spreads through the food chain, how botulism can be controlled, and where botulism outbreaks may occur next.
Avian Disease Research
Disease Ecology In the Pacific Basin: Wildlife and Public Health Concerns
Recent data related to USGS avian disease research is listed below. A complete listing of USGS avian disease data is available from the button below.
Hawaiian forest bird avian malaria prevalence 2018-2021 Hawaiian forest bird avian malaria prevalence 2018-2021
Data showing similar movement ecology between mallards infected and not infected with highly pathogenic avian influenza H5N1 Data showing similar movement ecology between mallards infected and not infected with highly pathogenic avian influenza H5N1
Epidemiologic and diagnostic data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) with highly pathogenic avian influenza H5N1 submitted to the USGS National Wildlife Health Center in 2022 Epidemiologic and diagnostic data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) with highly pathogenic avian influenza H5N1 submitted to the USGS National Wildlife Health Center in 2022
Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology” Raw MinION FASTQ datafiles corresponding to the paper “A comparison of avian influenza virus whole genome sequencing approaches using nanopore technology”
Predicted H5 and H7 subtype Avian Influenza Prevalence for Wild Waterfowl Species Across the Continental United States Predicted H5 and H7 subtype Avian Influenza Prevalence for Wild Waterfowl Species Across the Continental United States
Data describing infection status and movement ecology of North American waterfowl Data describing infection status and movement ecology of North American waterfowl
Spatial models indicating avian influenza transmission risk at the interface of domestic poultry and wild birds in China Spatial models indicating avian influenza transmission risk at the interface of domestic poultry and wild birds in China
Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl Data measuring avian influenza infection, mercury concentration, and body condition in wild waterfowl
Weekly estimates of the risk of avian influenza transmission from wild waterfowl to domestic poultry - Initial phase models Weekly estimates of the risk of avian influenza transmission from wild waterfowl to domestic poultry - Initial phase models
Relative susceptibility of poultry to the transmission of Avian Influenza from wild birds based upon poultry type and density Relative susceptibility of poultry to the transmission of Avian Influenza from wild birds based upon poultry type and density
Telemetry data of a Lesser Scaup (Aythya affinis) positive for 2.3.4.4 Highly Pathogenic H5N1 Telemetry data of a Lesser Scaup (Aythya affinis) positive for 2.3.4.4 Highly Pathogenic H5N1
Spatial Models of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission Spatial Models of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission
Recent publications related to USGS avian disease research are listed below. A complete listing of USGS avian disease publications is available from the button below.
Avian botulism case definition for wildlife Avian botulism case definition for wildlife
Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk Potential use of poultry farms by wild waterfowl in California's Central Valley varies across space, times of day, and species: implications for influenza transmission risk
Contrasting migratory chronology and routes of Lesser Scaup: Implications of different migration strategies in a broadly distributed species Contrasting migratory chronology and routes of Lesser Scaup: Implications of different migration strategies in a broadly distributed species
Highly pathogenic avian influenza A(H5N1) virus clade 2.3.4.4b infections in wild terrestrial mammals, United States, 2022 Highly pathogenic avian influenza A(H5N1) virus clade 2.3.4.4b infections in wild terrestrial mammals, United States, 2022
Climate change impacts on bird migration and highly pathogenic avian influenza Climate change impacts on bird migration and highly pathogenic avian influenza
Environmental surveillance and detection of infectious highly pathogenic avian influenza virus in Iowa wetlands Environmental surveillance and detection of infectious highly pathogenic avian influenza virus in Iowa wetlands
Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska Molecular detection and characterization of highly pathogenic H5N1 clade 2.3.4.4b avian influenza viruses among hunter-harvested wild birds provides evidence for three independent introductions into Alaska
High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie) High pathogenicity avian influenza represents an unprecedented conservation challenge for globally declining seabird populations. Response to: Editorial, Protect wildlife from livestock diseases (Thijs Kuiken & Ruth Cromie)
Avian malaria and the extinction of Hawaiian forest birds Avian malaria and the extinction of Hawaiian forest birds
Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria
Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria-resistant introduced birds Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria-resistant introduced birds
Avian influenza antibody prevalence increases with mercury contamination in wild waterfowl Avian influenza antibody prevalence increases with mercury contamination in wild waterfowl
Explore our science using the interactive tools below.