Publications

The San Francisco Bay–Delta Estuary watershed is a major source of freshwater for California and a profoundly human-impacted environment. The water quality monitoring that is critical to the management of this important water resource and ecosystem relies primarily on a system of fixed water-quality monitoring stations, but the limited spatial coverage often hinders understanding. Here, we show ho

The U.S. Geological Survey (USGS) has operated a water-quality monitoring network in San Francisco Bay since the late 1980s (Buchanan and others, 2015). This network includes 19 stations in the bay; currently, 8 stations are in operation (fig. 1). All eight stations are equipped with specific conductance (which can be related to salinity) and water-temperature sensors that record measurements at 1

The San Francisco Bay and Sacramento–San Joaquin Delta (Delta) are the recipients of inflows from a watershed that spans much of California and that has ties to nearly the entire state. Historically, California has buffered its water supplies and flood risks both within—and beyond—the Delta’s catchment by developing many reservoirs, large and small, high and low. Most of these reservoirs carry wat

The Black Rail is the smallest member of the avian family Rallidae and has a wide-ranging but highly scattered distribution throughout the New World. Of five subspecies, two occur in North America—the Eastern Black Rail (L.j. jamaicensis) and the California Black Rail (L.j. coturniculus). Throughout its range, the Black Rail is a secretive inhabitant of tidal and freshwater wetlands and rarely ven

We report the first study of stable carbon isotope fractionation during microbial fermentation of acetylene (C2H2) in sediments, sediment enrichments, and bacterial cultures. Kinetic isotope effects (KIEs) averaged 3.7 ± 0.5‰ for slurries prepared with sediment collected at an intertidal mudflat in San Francisco Bay and 2.7 ± 0.2‰ for a pure culture of Pelobacter sp. isolated from these sediments.

The 24 August 2014 Mw6.0 South Napa, California earthquake produced significant offsets on 12 borehole strainmeters in the San Francisco Bay area. These strainmeters are located between 24 and 80 km from the source and the observed offsets ranged up to 400 parts-per-billion (ppb), which exceeds their nominal precision by a factor of 100. However, the observed offsets of tidally calibrated strains

Migration strategies in estuarine fishes typically include behavioral adaptations for reducing energetic costs and mortality during travel to optimize reproductive success. The influence of tidal currents and water turbidity on individual movement behavior were investigated during the spawning migration of the threatened delta smelt, Hypomesus transpacificus, in the northern San Francisco Estuary,

The U.S. Geological Survey, in cooperation with the East Bay Municipal Utility District, carried out an investigation of aquifer-system deformation associated with groundwater-level changes at the Bayside Groundwater Project near the modern San Francisco Bay shore in San Lorenzo, California. As a part of the Bayside Groundwater Project, East Bay Municipal Utility District proposed an aquifer stora

The ARkStorm Scenario predicts that a prolonged winter storm event across California would cause extreme precipitation, flooding, winds, physical damages, and economic impacts. This study uses a literature review and geographic information system-based analysis of national and state databases to infer how and where ARkStorm could cause environmental damages, release contamination from diverse natu

The California Ridgway's rail Rallus obsoletus obsoletus (hereafter California rail) is a secretive marsh bird endemic to tidal marshes in the San Francisco Bay (hereafter bay) of California. The California rail has undergone significant range contraction and population declines due to a variety of factors, including predation and the degradation and loss of habitat. Call-count surveys, which incl

Phytoplankton blooms are dynamic phenomena of great importance to the functioning of estuarine and coastal ecosystems. We analysed a unique (large) collection of phytoplankton monitoring data covering 86 coastal sites distributed over eight regions in North America and Europe, with the aim of investigating common patterns in the seasonal timing and species composition of the blooms. The spring blo

In this paper, we report on the adaptation and application of a one-dimensional marsh surface elevation model, the Wetland Accretion Rate Model of Ecosystem Resilience (WARMER), to explore the conditions that lead to sustainable tidal freshwater marshes in the Sacramento–San Joaquin Delta. We defined marsh accretion parameters to encapsulate the range of observed values over historic and modern ti