Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 43130
Laboratory evaluation of phototaxis in cultured Cisco larvae Laboratory evaluation of phototaxis in cultured Cisco larvae
Objective Field observations in a Lake Ontario embayment suggested that there is a phototaxic response of larval coregonines that changes with development.Methods We used a controlled laboratory experiment with hatchery-reared larvae exposed to three different light regimes (24-h light, 24-h dark, or 12-h light followed by 12-h dark) to test for phototaxis in Cisco Coregonus artedi...
Authors
James E. McKenna Jr., Sarah R. Rubenstein
Line transect distance sampling and genetic analyses reveal a small but genetically diverse coastal Gopher Tortoise (Gopherus polyphemus) population Line transect distance sampling and genetic analyses reveal a small but genetically diverse coastal Gopher Tortoise (Gopherus polyphemus) population
Gopher Tortoises inhabit coastal systems, including barrier islands, across the southeastern U.S. St. Vincent National Wildlife Refuge is an uninhabited barrier island located off the coast of northwestern Florida. Although tortoises have been observed on the island, no information is available on the status of the population. We conducted a line transect distance sampling survey to...
Authors
Margaret Lamont, Irlanda Gallardo-Alanis, Diya Chordia, Michael Palandri, Ylenia Chiari
A Bayesian hierarchical modeling approach for species diversity in ecology A Bayesian hierarchical modeling approach for species diversity in ecology
Species diversity is the foundation of many ecological disciplines. This metric is often approximated using species richness and evenness, even though actual richness likely exceeds observations due to imperfect sampling methods. Estimating the “true” species richness, which includes identifying the number of missing species, has intrigued ecologists for decades. We adopted a parametric...
Authors
Song S. Qian, Mark Richard Dufour, Sabrina Jaffe, Corbin David Hilling, William D. Hintz
A practical decision tool for marine bird mortality assessments A practical decision tool for marine bird mortality assessments
Given the rise in anthropogenic, environmental, and disease events contributing to marine bird mortality, there is a critical need to improve the rigor of mortality assessments. Deficits in data collection and mortality estimation can hinder a manager’s ability to document the scale of events and assess population level impacts. Therefore, to inform decisions required during activities...
Authors
Johanna Harvey, Andrew M. Ramey, Stephanie Avery-Gomm, Gregory J. Robertson, Marc D. Romano, Jennifer M Mullinax, Megan L Boldenow, Philip W. Atkinson, Diann Prosser
A roadmap for implementing the Emergency Recovery Plan for freshwater biodiversity A roadmap for implementing the Emergency Recovery Plan for freshwater biodiversity
No abstract available.
Authors
Steve J. Cooke, Abigail J. Lynch, David Tickner, Robin Abell, Morgan L. Piczak, Angela H. Arthington, Michele Thieme, Denielle M. Perry, J. Robert Britton, Tatenda Dalu, Kim Birnie-Gauvin, Steve J. Ormerod, Fernanda Ayaviri Matuk, Rajeev Raghavan, John P. Smol
Size of modern megafire not unprecedented and a cumulative fire deficit persists Size of modern megafire not unprecedented and a cumulative fire deficit persists
Background
Authors
C. H. Guiterman, Ellis Q. Margolis, D. W. Huffman, M. K. Lonergan, M. Kaib, C. H. Baisan
Poor population recovery of Lake Washington Chinook Salmon (Oncorhynchus tshawytscha) in Pacific Northwestern USA may be associated with disease caused by Ceratonova shasta in an urban-influenced watershed Poor population recovery of Lake Washington Chinook Salmon (Oncorhynchus tshawytscha) in Pacific Northwestern USA may be associated with disease caused by Ceratonova shasta in an urban-influenced watershed
Understanding the effects of anthropogenic changes on fish disease is vital for supporting mitigative actions for fisheries population recovery. The Lake Washington watershed in the Pacific Northwestern United States is influenced by high urban development and climate change, compromising the sustainability of anadromous salmon. We investigated Ceratonova shasta, a myxozoan parasite, in...
Authors
Jan Lovy, Sophie Amanda Hall, Carl O. Ostberg, Justin Blaine Greer, Dorothy M. Chase, Genevieve M. Kent, Timothy J. Kuzan, Carla M. Conway
Predicted range shifts of non‐native grasses in response to climate change are influenced by photosynthetic pathway: A case study in the Hawaiian Islands Predicted range shifts of non‐native grasses in response to climate change are influenced by photosynthetic pathway: A case study in the Hawaiian Islands
Aim
Authors
Curtis Daehler, Kevin Faccenda, Elizabeth Aquino Peterson, Kelsey C. Brock, Lucas B. Fortini
Proceedings of the Floodplain Vegetation Monitoring Workshop for the Long Term Resource Monitoring Element of the Upper Mississippi River Restoration Program, January 7–8, 2025, Moline, Illinois Proceedings of the Floodplain Vegetation Monitoring Workshop for the Long Term Resource Monitoring Element of the Upper Mississippi River Restoration Program, January 7–8, 2025, Moline, Illinois
Authors
Shelby A. Weiss, Matthew L. Trumper, Nathan R. De Jager, Lyle J. Guyon, Molly Van Appledorn
Science strategy for Cotoni-Coast Dairies, an onshore unit of the California Coastal National Monument Science strategy for Cotoni-Coast Dairies, an onshore unit of the California Coastal National Monument
This science strategy describes the scientific mission of the unit, science previously conducted on or near the unit, and the partners who have given considerable effort to produce this science. Further, it identifies priority science needs, outlines the unit’s plan to meet those science needs in coordination with partners, shares scientific protocols for conducting new research, and...
Authors
Sarah E. Whipple, Sarah K. Carter, Zachary Ormsby, Benjamin Hoke, Michael Powers, Ryan E. O'Dell, Rebecca Spitzer
The Sedimentary Geochemistry and Paleoenvironments Project Phase 2 data release: An open data resource for the study of Earth's environmental history The Sedimentary Geochemistry and Paleoenvironments Project Phase 2 data release: An open data resource for the study of Earth's environmental history
Geochemical data from sedimentary rocks are the primary source of information regarding Earth's surface evolution through time, including its air and water envelopes and interactions with life and deep Earth processes. The Sedimentary Geochemistry and Paleoenvironments Project (SGP) is a scientific consortium centered around open data and community-driven development of...
Authors
Una Farrell, Hunter Olson, Maya Thompson, Michelle L. Abshire, Oyeleye Adeboye, Anne-Sofie Ahm, Lewis Alcott, Thomas Algeo, Ross Anderson, Arif Ansari, Lucas Bastos, Kohen Bauer, Brian Beaty, Justin E. Birdwell, Fred Bowyer, Jochen J. Brocks, Tessa Brunoir, James F. Busch, Donald Canfield, Fabrício Caxito, Chao-Chin Chang, Meng Cheng, Jean Clemente, David Cordie, Peter W. Crockford, Huan Cui, Celeste Cunningham, Tais Dahl, Janaina Rodrigues de Paula, Carol Dehler, Lucas Del Mouro, Keith Dewing, Dermeval Aparecido do Carmo, Stephen Dornbos, Nadja Drabon, Julie A. Dumoulin, Omabehere Ejeh, Emily Ellefson, Maya Elrick, Joseph Emmings, Bokanda Eric, Hao Fang, Gabriella Fazio, Henrique Fernandes, Katherine L. French, Robert R. Gaines, Richard Gaschnig, Timothy M. Gibson, Geoffrey J. Gilleaudeau, Karin Goldberg, Zheng Gong, Amy Hagen, Galen P. Halverson, Kalev G. Hantsoo, Emma R. Haxen, Miles A. Henderson, João-Pedro Hippertt, Malcolm S. W. Hodgskiss, Paul Hoffman, Edward Huang, Benjamin Johnson, Pavel B. Kabanov, Junyao Kang, C. Brenhin Keller, Brian Kendall, Julien Kimmig, Sara Kimmig, Michael A. Kipp, Andrew H. Knoll, Timmu Kreitsmann, Anurag Kulkarni, Alexandra Kunert, Marcus Kunzmann, Jiankang Lai, Richard O. Lease, Chao Li, Sen Li, Alex Lipp, Yang Liu, David Loydell, Xinze Lu, Katie Maloney, Kaarel Mänd, Alexie E. G. Millikin, N. Tanner Mills, Kento Motomura, Chiza N. Mwinde, Lyle Nelson, Nora M. Nieminski, Brennan O'Connell, Edel Mary O'Sullivan, Juliana Okubo, Jaden Olah, Frantz Ossa Ossa, Chadlin Ostrander, Kärt Paiste, Camille A. Partin, Egberto Pereira, Shanan Peters, Tiffany L. Playter, Susannah M. Porter, Simon W. Poulton, Sara B. Pruss, Zhen Qiu, Daven Quinn, Mariano Remirez, Sebastian Richiano, Sylvain Richoz, Kathryn Rico, Samantha R. Ritzer, Zachary Roney, Alan D. Rooney, William C. Rose, Elias Rugen, Swapan K. Sahoo, Shane D. Schoepfer, Judith A. Sclafani, Nathan D. Sheldon, Yanan Shen, Graham Shields, Pulkit Singh, Arvind Singh, Sarah P. Slotznick, Emily Smith, Haijun Song, Sam Spinks, Richard G. Stockey, Justin Strauss, Eva Stüeken, Zongyuan Sun, Dongjie Tang, Lidya Tarhan, Danielle Thomson, Nicholas Tosca, Rosalie Tostevin, Chenyi Tu, Maoli Vizcaíno, Yuxuan Wang, Changle Wang, Xiaomei Wang, Lucas Warren, Lucy Webb, Philip R. Wilby, Christina R. Woltz, Rachel Wood, Yuyang Wu, Xiuqing Yang, Inessa A. Yurchenko, Junpeng Zhang, Jessica Whiteside, Benjamin C. Gill, Akshay Mehra, Kimberly V. Lau, Noah J. Planavsky, David T. Johnston, Erik A Sperling
Detecting bumble bees in the wild using environmental DNA: Development and validation of a qPCR assay for the endangered Franklin’s bumble bee (Bombus franklini) Detecting bumble bees in the wild using environmental DNA: Development and validation of a qPCR assay for the endangered Franklin’s bumble bee (Bombus franklini)
Environmental DNA (eDNA) sampling is a noninvasive alternative to conventional methods of surveying insects that may be particularly useful for detecting pollinators. We developed a quantitative polymerase chain reaction (qPCR) assay to detect the DNA of Franklin’s bumble bee (Bombus franklini) from flower samples and conducted an initial test of the assay using samples collected within...
Authors
Michaela Ray Grossklaus, David S. Pilliod, Stephen Frank Spear, Matthew B B. Laramie, Akhil Kholwadwala, Amanda Jean Boone, Yer Lor, Marissa Kaminski, Jeffrey G. Everett