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Bioassessment/Biomonitoring

Filter Total Items: 21

Enabling AI for citizen science in fish biology

Artificial Intelligence (AI) is revolutionizing ecology and conservation by enabling species recognition from photos and videos. Our project evaluates the capacity to expand AI for individual fish recognition for population assessment. The success of this effort would facilitate fisheries analysis at an unprecedented scale by engaging anglers and citizen scientists in imagery collection. This...
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Enabling AI for citizen science in fish biology

Artificial Intelligence (AI) is revolutionizing ecology and conservation by enabling species recognition from photos and videos. Our project evaluates the capacity to expand AI for individual fish recognition for population assessment. The success of this effort would facilitate fisheries analysis at an unprecedented scale by engaging anglers and citizen scientists in imagery collection. This...
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Eastern Ecological Science Center partnership with Atlantic States Marine Fisheries Commission

Collaboration between the world-class expertise of USGS scientists, the Atlantic States Marine Fisheries Commission’s Science Program, and state and federal fishery agencies demonstrates the power of partnerships to solve seemingly-insurmountable problems in sustainable and cooperative management of Atlantic coastal fisheries.
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Eastern Ecological Science Center partnership with Atlantic States Marine Fisheries Commission

Collaboration between the world-class expertise of USGS scientists, the Atlantic States Marine Fisheries Commission’s Science Program, and state and federal fishery agencies demonstrates the power of partnerships to solve seemingly-insurmountable problems in sustainable and cooperative management of Atlantic coastal fisheries.
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Assessing stream health and fish habitat in streams of the Chesapeake Bay Watershed

Streams and rivers provide habitat for a diverse array of aquatic and semi-aquatic species. However, human alteration to landscapes and riverscapes has affected this habitat resulting in its degradation and thus loss of habitat and associated sensitive aquatic species. While this relationship has been known for many years, only recently has the availability of data and analytical capabilities...
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Assessing stream health and fish habitat in streams of the Chesapeake Bay Watershed

Streams and rivers provide habitat for a diverse array of aquatic and semi-aquatic species. However, human alteration to landscapes and riverscapes has affected this habitat resulting in its degradation and thus loss of habitat and associated sensitive aquatic species. While this relationship has been known for many years, only recently has the availability of data and analytical capabilities...
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Exploring the potential effects of shale oil and gas development on freshwaters

Widespread shale oil and gas (unconventional oil and gas, UOG) has only recently begun and many gaps in our knowledge of its potential effects to freshwaters exist.
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Exploring the potential effects of shale oil and gas development on freshwaters

Widespread shale oil and gas (unconventional oil and gas, UOG) has only recently begun and many gaps in our knowledge of its potential effects to freshwaters exist.
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Brook trout vulnerability to drought: eastern component of USGS national integrated ecohydrological research and monitoring plans

There is a growing and urgent need to develop and implement innovative strategies to research, monitor, and manage freshwater resources as societal demands escalate simultaneously with climate-driven changes in water availability.
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Brook trout vulnerability to drought: eastern component of USGS national integrated ecohydrological research and monitoring plans

There is a growing and urgent need to develop and implement innovative strategies to research, monitor, and manage freshwater resources as societal demands escalate simultaneously with climate-driven changes in water availability.
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A hydrological framework to improve precision of Vital Signs metrics in the Appalachian highlands

Stream flow is a fundamental driver of ecological structure and function, but its influence on bioassessment measures is poorly understood. Although extreme flow conditions (e.g., floods and droughts) have long been known to play a central role in structuring stream communities, a mechanistic understanding of the linkages between flow variables, landscape and local physical characteristics, and...
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A hydrological framework to improve precision of Vital Signs metrics in the Appalachian highlands

Stream flow is a fundamental driver of ecological structure and function, but its influence on bioassessment measures is poorly understood. Although extreme flow conditions (e.g., floods and droughts) have long been known to play a central role in structuring stream communities, a mechanistic understanding of the linkages between flow variables, landscape and local physical characteristics, and...
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Deepwater Atlantic Habitats II: Continued Atlantic Research and Exploration in Deepwater Ecosystems with Focus on Coral, Canyon, and Seep Communities. Part II: Genetic Connectivity and Oceanomic Studies

This study utilizes genetics and genomics techniques to characterize biodiversity and genetic connectivity among deep-sea coral habitats and cold seeps in and near submarine canyons and will use environmental DNA techniques to characterize plankton diversity and to identify key contributors to carbon export from surface waters that sustain sensitive benthic communities. The proposed genetics and...
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Deepwater Atlantic Habitats II: Continued Atlantic Research and Exploration in Deepwater Ecosystems with Focus on Coral, Canyon, and Seep Communities. Part II: Genetic Connectivity and Oceanomic Studies

This study utilizes genetics and genomics techniques to characterize biodiversity and genetic connectivity among deep-sea coral habitats and cold seeps in and near submarine canyons and will use environmental DNA techniques to characterize plankton diversity and to identify key contributors to carbon export from surface waters that sustain sensitive benthic communities. The proposed genetics and...
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Novel approach using flocculation to concentrate edna to search for early invasions of specific aquatic invasive species

Early detection systems for aquatic nuisance species have been improved by the advancement of polymerase chain reactions that amplify DNA sequences for decoding.
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Novel approach using flocculation to concentrate edna to search for early invasions of specific aquatic invasive species

Early detection systems for aquatic nuisance species have been improved by the advancement of polymerase chain reactions that amplify DNA sequences for decoding.
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Use of next-generation sequencing for the dietary analyses of smallmouth bass (Micropterus dolomieu) stomach content

The USGS Leetown Science Center (USGS LSC) scientists are collaborating with the PADEP (SMB) to develop and evaluate a genetic assay for fish diets that will allow us to develop a cost-effective monitoring program for determining the diet of wild fish. We will test the utility of this method and, once fully developed, these methods could be generally applied in many other piscivorous species of...
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Use of next-generation sequencing for the dietary analyses of smallmouth bass (Micropterus dolomieu) stomach content

The USGS Leetown Science Center (USGS LSC) scientists are collaborating with the PADEP (SMB) to develop and evaluate a genetic assay for fish diets that will allow us to develop a cost-effective monitoring program for determining the diet of wild fish. We will test the utility of this method and, once fully developed, these methods could be generally applied in many other piscivorous species of...
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Development of Next Generation Techniques of fecal samples collected from nestling cactus wren

Coastal cactus wren populations have declined in southern California over the last three decades. In San Diego County, this decline has been especially noticeable in the Otay area, which in 2014 supported 14 territories on conserved lands. In the past, there were 25-53 active territories reported for this same area, with the highest estimate in 1992. There is also concern the number of active...
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Development of Next Generation Techniques of fecal samples collected from nestling cactus wren

Coastal cactus wren populations have declined in southern California over the last three decades. In San Diego County, this decline has been especially noticeable in the Otay area, which in 2014 supported 14 territories on conserved lands. In the past, there were 25-53 active territories reported for this same area, with the highest estimate in 1992. There is also concern the number of active...
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Metabarcoding of stomach contents from the Round Goby (Negobius melanostromus) in Pennsylvania

The Round Goby, Neogobius melanostomus, is a small benthic fish native to the Sea of Azov, the Caspian Sea, the Black Sea and the Sea of Marmara.
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Metabarcoding of stomach contents from the Round Goby (Negobius melanostromus) in Pennsylvania

The Round Goby, Neogobius melanostomus, is a small benthic fish native to the Sea of Azov, the Caspian Sea, the Black Sea and the Sea of Marmara.
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Establishing Molecular Methods to Quantitatively Profile Stomach Diet Items of Fish—Application to the Invasive Blue Catfish (Ictalurus furcatus)

USGS scientists are collaborating with the Maryland Department of Natural Resources (MDDNR) to develop and evaluate a genetic assay for blue catfish fish diets that will allow us to design a cost-effective monitoring program for determining the diet of wild fish.
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Establishing Molecular Methods to Quantitatively Profile Stomach Diet Items of Fish—Application to the Invasive Blue Catfish (Ictalurus furcatus)

USGS scientists are collaborating with the Maryland Department of Natural Resources (MDDNR) to develop and evaluate a genetic assay for blue catfish fish diets that will allow us to design a cost-effective monitoring program for determining the diet of wild fish.
Learn More