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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42700

Empirical evidence for effects of invasive American Bullfrogs on occurrence of native amphibians and emerging pathogens Empirical evidence for effects of invasive American Bullfrogs on occurrence of native amphibians and emerging pathogens

Invasive species and emerging infectious diseases are two of the greatest threats to biodiversity. American Bullfrogs (Rana [Lithobates] catesbeiana), which have been introduced to many parts of the world, are often linked with declines of native amphibians via predation and spreading emerging pathogens such as amphibian chytrid fungus (Batrachochytrium dendrobatidis [Bd]) and...
Authors
Blake R. Hossack, Emily B Oja, Audrey K Owens, David L. Hall, Cassidi Cobos, Catherine L. Crawford, Caren S. Goldberg, Shaula Hedwell, Paige E. Howell, Julio A. Lemos-Espinal, Susan K MacVean, Magnus McCaffery, Cody Mosley, Erin L. Muths, Brent H. Sigafus, Micahel J Sredl, James C. Rorabaugh

Extent, patterns, and drivers of hypoxia in the world's streams and rivers Extent, patterns, and drivers of hypoxia in the world's streams and rivers

Hypoxia in coastal waters and lakes is widely recognized as a detrimental environmental issue, yet we lack a comparable understanding of hypoxia in rivers. We investigated controls on hypoxia using 118 million paired observations of dissolved oxygen (DO) concentration and water temperature in over 125,000 locations in rivers from 93 countries. We found hypoxia (DO 
Authors
Joanna R Blaszczak, Lauren E Koenig, Francine H. Mejia, Alice M. Carter, Lluis Gomez-Gener, Christoper L Dutton, Nancy B. Grimm, Judson Harvey, Ashley M. Helton, Matthew J. Cohen

Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus) Using landscape genomics to delineate future adaptive potential for climate change in the Yosemite toad (Anaxyrus canorus)

An essential goal in conservation biology is delineating population units that maximize the probability of species persisting into the future and adapting to future environmental change. However, future-facing conservation concerns are often addressed using retrospective patterns that could be irrelevant. We recommend a novel landscape genomics framework for delineating future “Geminate
Authors
Paul A. Maier, Amy G. Vandergast, Andrew J. Bohonak

Historical Structure from Motion (HSfM): Automated processing of historical aerial photographs for long-term topographic change analysis Historical Structure from Motion (HSfM): Automated processing of historical aerial photographs for long-term topographic change analysis

Precisely measuring the Earth’s changing surface on decadal to centennial time scales is critical for many science and engineering applications, yet long-term records of quantitative landscape change are often temporally and geographically sparse. Archives of scanned historical aerial photographs provide an opportunity to augment these records with accurate elevation measurements that...
Authors
Friedrich Knuth, David Shean, Shashank Bhushan, Eli Schwat, Oleg Alexandrov, Christopher J. McNeil, Amaury Dehecq, Caitlyn Florentine, Shad O'Neel

Divergent Serpentoviruses in free-ranging invasive pythons and native colubrids in southern Florida, United States Divergent Serpentoviruses in free-ranging invasive pythons and native colubrids in southern Florida, United States

Burmese python (Python bivittatus) is an invasive snake that has significantly affected ecosystems in southern Florida, United States. Aside from direct predation and competition, invasive species can also introduce nonnative pathogens that can adversely affect native species. The subfamily Serpentovirinae (order Nidovirales) is composed of positive-sense RNA viruses primarily found in...
Authors
Steven B Tillis, Jillian M. Josimovich, Melissa A. Miller, Hoon-Hanks Laura L., Arik M. Hartmann, Natalie M. Claunch, Marley E. Iredale, Tracey D. Logan, Amy A. Yackel Adams, Ian A. Bartoszek, John S. Humphrey, Bryan M. Kluever, Mark D. Stenglein, Robert Reed, Christina M. Romagosa, James FX. Wellehan, Robert J. Ossiboff

Estimating reproductive and juvenile survival rates when offspring ages are uncertain: A novel multievent mark-resight model with beluga whale case study Estimating reproductive and juvenile survival rates when offspring ages are uncertain: A novel multievent mark-resight model with beluga whale case study

Understanding the survival and reproductive rates of a population is critical to determining its long-term dynamics and viability. Mark-resight models are often used to estimate these demographic rates, but estimation of survival and reproductive rates is challenging, especially for wide-ranging, patchily distributed, or cryptic species. In particular, existing mark-resight models cannot
Authors
Gina K Himes Boor, Tamara L McGuire, Amanda J. Warlick, Rebecca L. Taylor, Sarah J. Converse, John R McClung, Amber D Stephens

Geochemistry and fluxes of gases from hydrothermal features at Newberry Volcano, Oregon, USA Geochemistry and fluxes of gases from hydrothermal features at Newberry Volcano, Oregon, USA

We present the chemical and isotopic compositions of gases and fluxes of CO2 from the hydrothermal features of Newberry Volcano, a large composite volcano located in Oregon's Cascade Range with a summit caldera that hosts two lakes, Paulina and East Lakes. Gas samples were collected from 1982 to 2021 from Paulina Hot Springs (PHS) on the shore of Paulina Lake, East Lake Hot Springs (ELHS...
Authors
Jennifer L. Lewicki, William C. Evans, Steven E. Ingebritsen, Laura E. Clor, Peter J. Kelly, Sara Peek, Robert A. Jensen, Andrew G. Hunt

Future direction of fuels management in sagebrush rangelands Future direction of fuels management in sagebrush rangelands

Sagebrush ecosystems in the United States have been declining since EuroAmerican settlement, largely due to agricultural and urban development, invasive species, and altered fire regimes, resulting in loss of biodiversity and wildlife habitat. To combat continued conversion to undesirable ecological states and loss of habitat to invasive species fueled by frequent fire, a variety of fuel
Authors
Douglas J. Shinneman, Eva Strand, Mike Pellant, John T. Abatzoglou, Mark W. Brunson, Nancy Glenn, Julie A. Heinrichs, Mojtaba Sadegh, Nicole Vaillant

Maladaptive nest-site selection and reduced nest survival in female sage-grouse following wildfire Maladaptive nest-site selection and reduced nest survival in female sage-grouse following wildfire

Increased wildfire frequency and associated replacement of sagebrush (Artemisia spp.) with invasive annual grasses contribute to declines of greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse) populations across the Great Basin. However, little is known about wildfire effects on sage-grouse nest-site selection and nest survival, which can influence population...
Authors
Ian F. Dudley, Peter S. Coates, Brian G. Prochazka, Dawn M. Davis, Scott C. Gardner, David J. Delehanty

Divergent responses of butterflies and bees to burning and grazing management in tallgrass prairies Divergent responses of butterflies and bees to burning and grazing management in tallgrass prairies

Butterflies and bees contribute significantly to grassland biodiversity and play important roles as pollinators and herbivores. Grassland conservation and management must be seen through the lens of insect conservation and management if these species are to thrive. In North America, grasslands are a product of climate and natural disturbances such as fire and grazing. These natural...
Authors
Julia B. Leone, Nora P. Pennarola, Jennifer Larson, Karen Oberhauser, Diane L. Larson

Provenance, genotype, and flooding influence growth and resource acquisition characteristics in a clonal, riparian shrub Provenance, genotype, and flooding influence growth and resource acquisition characteristics in a clonal, riparian shrub

Premise Riparian plants can exhibit intraspecific phenotypic variability across the landscape related to temperature and flooding gradients. Phenotypes that vary across a climate gradient are often partly genetically determined and may differ in their response to inundation. Changes to inundation patterns across a climate gradient could thus result in site-specific inundation responses...
Authors
Emily C. Palmquist, Kiona Ogle, Thomas G. Whitham, Gerard J. Allan, Patrick B. Shafroth, Bradley J. Butterfield

BIA branch of tribal climate resilience regional assessment report BIA branch of tribal climate resilience regional assessment report

The Bureau of Indian Affairs (BIA) Branch of Tribal Climate Resilience (TCR) was established in 2011 to enable Tribal and BIA Office of Trust Services Programs to incorporate climate considerations into their programs' planning and decision-making. The TCR’s purpose is to fulfill trust responsibility to Federally recognized Tribal Nations by supporting and building Tribal capacity for...
Authors
Coral Avery, Corwin Carroll, Lannette Marie Rangel
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