Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42871
Estimating parasite infrapopulation size given imperfect detection: Proof-of-concept with ectoparasitic fleas on prairie dogs Estimating parasite infrapopulation size given imperfect detection: Proof-of-concept with ectoparasitic fleas on prairie dogs
Parasite infrapopulation size - the population of parasites affecting a single host - is a central metric in parasitology. However, parasites are small and elusive such that imperfect detection is expected. Repeated sampling of parasites during primary sampling occasions (e.g., each host capture) informs the detection process. Here, we estimate flea (Siphonaptera) infrapopulation size on...
Authors
David A. Eads, Kathryn P. Huyvaert, Dean E. Biggins
Landscape and connectivity metrics as a spatial tool to support invasive annual grass management decisions Landscape and connectivity metrics as a spatial tool to support invasive annual grass management decisions
The spatial patterns and context of invasions are increasingly recognized as important for successful and efficient management actions. Beyond mapping occurrence or percent cover in pixels, spatial summary information that describes the size and arrangement of patches in the context of a larger landscape (e.g., infested regions, connected patch networks) can add a depth of information...
Authors
Erin K. Buchholtz, Julie A. Heinrichs, Michele R. Crist
Assessment of habitat use by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River Basin, 2020–21 Assessment of habitat use by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Willamette River Basin, 2020–21
We conducted a field study during 2020–21 to describe habitat use patterns of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the mainstem Willamette, McKenzie, and Santiam Rivers and to evaluate how habitat suitability criteria affected the predictive accuracy of a hydraulic habitat model. Two approaches were used to collect habitat use data: a stratified sampling design was used...
Authors
Gabriel S. Hansen, Russell W. Perry, Tobias J. Kock, James S. White, Philip V. Haner, John M. Plumb, J. Rose Wallick
The effects of management practices on grassland birds—Clay-colored Sparrow (Spizella pallida) The effects of management practices on grassland birds—Clay-colored Sparrow (Spizella pallida)
Keys to Clay-colored Sparrow (Spizella pallida) management include providing grasslands with a shrub or forb component or shrub-dominated edge habitat, which includes dense grass and moderately high litter cover, and avoiding disturbances that completely eliminate woody vegetation. Clay-colored Sparrows have been reported to use habitats with 20–186 centimeters (cm) average vegetation...
Authors
Jill A. Shaffer, Lawrence D. Igl, Douglas H. Johnson, Marriah L. Sondreal, Christopher M. Goldade, Melvin P. Nenneman, Betty R. Euliss
Landscape configuration influences Oma‘o (Myadestes obscurus) song diversity Landscape configuration influences Oma‘o (Myadestes obscurus) song diversity
Acoustic communication in the form of songs is a learned behavior in oscine that can be passed down from one generation to the next through cultural transmission. Over time songs can change when populations become isolated from one another, creating dialects that are distinct to a population. Habitat fragmentation is an isolating mechanism that can influence differences in songs between
Authors
Nicole Fernandez, Kristina L. Paxton, Eben H. Paxton, Adam A. Pack, Patrick J. Hart
Genetic diversity, structure, and effective population size of an endangered, endemic hoary bat, ʻōpeʻapeʻa, across the Hawaiian Islands Genetic diversity, structure, and effective population size of an endangered, endemic hoary bat, ʻōpeʻapeʻa, across the Hawaiian Islands
Island bat species are disproportionately at risk of extinction, and Hawaiʻi’s only native terrestrial land mammal, the Hawaiian hoary bat (Lasiurus semotus) locally known as ʻōpeʻapeʻa, is no exception. To effectively manage this bat species with an archipelago-wide distribution, it is important to determine the population size on each island and connectivity between islands. We used 18...
Authors
Corinna Pinzari, Mona Renee Bellinger, Donald K. Price, Frank J Bonaccorso
Context-dependent representation of within- and between-model uncertainty: Aggregating probabilistic predictions in infectious disease epidemiology Context-dependent representation of within- and between-model uncertainty: Aggregating probabilistic predictions in infectious disease epidemiology
Probabilistic predictions support public health planning and decision making, especially in infectious disease emergencies. Aggregating outputs from multiple models yields more robust predictions of outcomes and associated uncertainty. While the selection of an aggregation method can be guided by retrospective performance evaluations, this is not always possible. For example, if...
Authors
Emily Howerton, Michael C. Runge, Tiffany L. Bogich, Rebecca K. Borchering, Hidetoshi Inamine, Justin Lessler, Luke C Mullany, William J.M. Probert, Claire P. Smith, Shaun Truelove, Cècile Viboud, Katriona Shea
Over half a century record of limnology data from Lake Powell, desert southwest United States: From reservoir filling to present day (1964–2021) Over half a century record of limnology data from Lake Powell, desert southwest United States: From reservoir filling to present day (1964–2021)
Lake Powell is a large water storage reservoir in the arid southwestern United States. Here, we present a 58-yr limnology dataset that captures water quality parameters from reservoir filling to present day (temperature, salinity, major ions, total suspended solids), as well as a 38-yr record of Secchi depth, and a ~ 30-yr record of nutrients, phytoplankton, and zooplankton assemblages...
Authors
Bridget R. Deemer, Caitlin M. Andrews, Kristin E. Strock, Nicholas Voichick, James Hensleigh, John Beaver, Robert Radtke
Stochastic watershed model ensembles for long-range planning: Verification and validation Stochastic watershed model ensembles for long-range planning: Verification and validation
Deterministic watershed models (DWMs) are used in nearly all hydrologic planning, design, and management activities, yet they cannot generate streamflow ensembles needed for hydrologic risk management (HRM). The stochastic component of DWMs is often ignored in practice, leading to a systematic bias in extreme events. Since traditional stochastic streamflow models used in HRM struggle to...
Authors
Ghazal Shabestanipour, Zachary P Brodeur, William H. Farmer, Scott Steinschneider, Richard M Vogel, Jonathan Lamontagne
Masting is shaped by tree-level attributes and stand structure, more than climate, in a Rocky Mountain conifer species Masting is shaped by tree-level attributes and stand structure, more than climate, in a Rocky Mountain conifer species
Masting describes the spatiotemporal variability in seed production by a population of plants. Both abiotic and biotic factors drive masting, but the importance of these factors can vary among individuals and populations. To better understand how a changing climate, altered disturbance regimes, or novel management strategies might affect future seed production, we quantified the joint...
Authors
Andreas Wion, Ian S. Pearse, Kyle C. Rodman, Thomas T. Veblen, Miranda D. Redmond
Recent and future declines of a historically widespread pollinator linked to climate, land cover, and pesticides Recent and future declines of a historically widespread pollinator linked to climate, land cover, and pesticides
The acute decline in global biodiversity includes not only the loss of rare species, but also the rapid collapse of common species across many different taxa. The loss of pollinating insects is of particular concern because of the ecological and economic values these species provide. The western bumble bee (Bombus occidentalis) was once common in western North America, but this species...
Authors
William Michael Janousek, Margaret R. Douglas, Syd Cannings, Marion Clement, Casey Delphia, Jeffrey Everett, Richard G. Hatfield, Douglas A. Keinath, Jonathan B Koch, Lindsie M. McCabe, John Michael Mola, Jane Ogilvie, Imtiaz Rangwala, Leif L Richardson, Ashley T. Rohde, James P. Strange, Lusha M. Tronstad, Tabitha A. Graves
Effectiveness of a decade of treatments to reduce invasive buffelgrass (Pennisetum ciliare) Effectiveness of a decade of treatments to reduce invasive buffelgrass (Pennisetum ciliare)
The invasion of nonnative grasses threatens biodiversity and ecosystem function globally through competition with native plant species and increases to wildfire frequency and intensity. Management actions to reduce buffelgrass [Pennisetum ciliare (L.) Link], an invasive warm-season perennial bunchgrass, are widely implemented, with chemical and mechanical treatments extending over two...
Authors
Yue M. Li, Seth M. Munson, Ya-Ching Lin, Perry Grissom