Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42702
Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan Microbial source tracking and evaluation of best management practices for restoring degraded beaches of Lake Michigan
Attempts to mitigate shoreline microbial contamination require a thorough understanding of pollutant sources, which often requires multiple years of data collection (e.g., point/nonpoint) and the interacting factors that influence water quality. Because restoration efforts can alter shoreline or beach morphology, revisiting source inputs is often necessary. Microbial source tracking (MST...
Authors
Meredith B. Nevers, Paul M. Buszka, Muruleedhara Byappanahalli, Travis Cole, Steven R. Corsi, P. Ryan Jackson, Julie L. Kinzelman, Cindy H Nakatsu, Mantha S. Phanikumar
Depth drives growth dynamics of dreissenid mussels in Lake Ontario Depth drives growth dynamics of dreissenid mussels in Lake Ontario
Understanding dreissenid mussel population dynamics and their impacts on lake ecosystems requires quantifying individual growth across a range of habitats. Most dreissenid mussel growth rates have been estimated in nutrient rich or nearshore environments, but mussels have continued to expand into deep, cold, low-nutrient habitats of the Great Lakes. We measured annual quagga mussel...
Authors
Ashley Elgin, Paul Glyshaw, Brian Weidel
Evaluation of post-stocking dispersal and mortality of juvenile lake trout Salvelinus namaycush in Lake Ontario using acoustic telemetry Evaluation of post-stocking dispersal and mortality of juvenile lake trout Salvelinus namaycush in Lake Ontario using acoustic telemetry
Wild reproduction by stocked lake trout Salvelinus namaycush in Lake Ontario has yet to produce a self-sustaining population, requiring a reliance on stocking. Once released, age-1 juvenile lake trout are not typically surveyed until age-2, creating a gap in knowledge of fine-scale post-release behaviors. A method to track fine-scale movements and estimate mortality of juvenile lake...
Authors
Alexander J. Gatch, Stacy L. Furgal, Dimitry Gorsky, J. Ellen Marsden, Zy F. Biesinger, Brian F. Lantry
An evaluation of fish spawning on degraded and remnant reefs in Saginaw Bay, Lake Huron An evaluation of fish spawning on degraded and remnant reefs in Saginaw Bay, Lake Huron
Saginaw Bay is a shallow, nutrient-rich embayment in Lake Huron that historically had a complex network of natural rocky reefs. These reef habitats were used as spawning and nursery areas for a variety of fish species, but decades of land-use related sedimentation caused many of these reefs to be degraded. Our study objectives were to analyze abiotic and biotic conditions on degraded and...
Authors
N Kalejs, Mitchell T. Zischke, J. Beugly, P. Collingsworth, Edward F. Roseman, R. Douglas Hunter, D. Fielder, T. Hook
Estimating detection and occupancy of secretive marsh bird species in low and high saline marshes in southwestern Louisiana using automated recording units Estimating detection and occupancy of secretive marsh bird species in low and high saline marshes in southwestern Louisiana using automated recording units
Secretive marsh birds (SMBs) are important indicator species of coastal wetlands but are difficult to detect and monitor. In coastal Louisiana, an important stronghold for these species, climate and hydrological models predict that freshwater and intermediate marshes will expand in the next 50 years, while brackish marshes will shrink. We used a multi-species Bayesian hierarchical...
Authors
Hardin Waddle, Landon R. Jones, Phillip L. Vasseur, Clint W. Jeske
A comparison of eDNA and visual survey methods for detection of longnose darter Percina nasuta in Missouri A comparison of eDNA and visual survey methods for detection of longnose darter Percina nasuta in Missouri
The longnose darter Percina nasuta is a rare and cryptic fish that recently disappeared from much of its historic range. We developed and used an environmental DNA (eDNA) assay for longnose darter paired with visual surveys to better determine the species’ range and compare detection probability between sampling approaches in an occupancy modeling framework. We detected longnose darter...
Authors
Jacob Thomas Westhoff, Leah K. Berkman, Katy E. Klymus, Nathan Thompson, Cathy A. Richter
Comparative virulence of spring viremia of carp virus (SVCV) genotypes in two koi varieties Comparative virulence of spring viremia of carp virus (SVCV) genotypes in two koi varieties
Spring viremia of carp virus (SVCV), is a lethal freshwater pathogen of cyprinid fish, and Cyprinus carpio koi is a primary host species. The virus was initially described in the 1960s after outbreaks occurred in Europe, but a global expansion of SVCV has been ongoing since the late 1990s. Genetic typing of SVCV isolates separates them into 4 genotypes that are correlated with geographic...
Authors
Eveline J. Emmenegger, Emma K. Bueren, Peng Jia, Noble Hendrix, Hong Liu
Pedigree analysis and estimates of effective breeding size characterize sea lamprey reproductive biology Pedigree analysis and estimates of effective breeding size characterize sea lamprey reproductive biology
The sea lamprey (Petromyzon marinus) is an invasive species in the Great Lakes and the focus of a large control and assessment program. Current assessment methods provide information on the census size of spawning adult sea lamprey in a small number of streams, but information characterizing reproductive success of spawning adults is rarely available. We used RAD-capture sequencing to...
Authors
Ellen M. Weise, Kim T. Scribner, Jean V. Adams, Olivia Boeberitz, Aaron K. Jubar, Gale Bravener, Nicholas S. Johnson, John D. Robinson
Climate change and plant regeneration from seeds in Mediterranean regions of the Northern Hemisphere Climate change and plant regeneration from seeds in Mediterranean regions of the Northern Hemisphere
Mediterranean regions are biodiversity hotspots whose landscapes are characterized by evergreen sclerophyllous vegetation, mild-wet winters, and hot-dry summers. In the Northern Hemisphere, they occur in the Mediterranean Basin and California regions. In these areas, whose habitats are heavily shaped by centuries of anthropic activities, the main effects of climate change include a...
Authors
Efsio Mattana, Angelino Carta, Eduardo Fernandez-Pascual, Jon Keeley, Hugh W. Pritchard
A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon A climate-mediated shift in the estuarine habitat mosaic limits prey availability and reduces nursery quality for juvenile salmon
The estuarine habitat mosaic supports the reproduction, growth, and survival of resident and migratory fish species by providing a diverse portfolio of unique habitats with varying physical and biological features. Global climate change is expected to result in increasing temperatures, rising sea levels, and changes in riverine hydrology, which will have profound effects on the extent...
Authors
Melanie J. Davis, Isa Woo, Christopher S. Ellings, Sayre Hodgson, David Beauchamp, Glynnis Nakai, Susan E.W. De La Cruz
Average kinship within bighorn sheep populations is associated with connectivity, augmentation, and bottlenecks Average kinship within bighorn sheep populations is associated with connectivity, augmentation, and bottlenecks
Understanding the influence of population attributes on genetic diversity is important to advancement of biological conservation. Because bighorn sheep (Ovis canadensis) populations vary in size and management history, the species provides a unique opportunity to observe the response of average pairwise kinship, inversely related to genetic diversity, to a spectrum of natural and...
Authors
Elizabeth P Flesch, Tabitha A. Graves, Jennifer Thomson, Kelly M. Proffitt, Robert A. Garrott