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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42768

Planning for ecological drought: Integrating ecosystem services and vulnerability assessment Planning for ecological drought: Integrating ecosystem services and vulnerability assessment

As research recognizes the importance of ecological impacts of drought to natural and human communities, drought planning processes need to better incorporate ecological impacts. Drought planning currently recognizes the vulnerability of some ecological impacts from drought (e.g., loss of instream flow affecting fish populations). However, planning often does not identify all the...
Authors
Nejem Raheem, Amanda E. Cravens, Molly S. Cross, Shelley D. Crausbay, Aaron R. Ramirez, Jamie McEvoy, Dionne Zoanni, Deborah J. Bathke, Michael Hayes, Shawn Carter, Madeleine Rubenstein, Ann Schwend, Kimberly R. Hall, Paul Suberu

A comparison of riparian vegetation sampling methods along a large, regulated river A comparison of riparian vegetation sampling methods along a large, regulated river

Monitoring riparian vegetation cover and species richness is an important component of assessing change and understanding ecosystem processes. Vegetation sampling methods determined to be the best option in other ecosystems (e.g., desert grasslands and arctic tundra) may not be the best option in multilayered, species rich, heterogeneous riparian vegetation. This study examines the...
Authors
Emily C. Palmquist, Sarah Sterner, Barbara Ralston

Evidence of Culiseta mosquitoes as vectors for Plasmodium parasites in Alaska Evidence of Culiseta mosquitoes as vectors for Plasmodium parasites in Alaska

Mosquito vectors play a crucial role in the distribution of avian Plasmodium parasites worldwide. At northern latitudes, where climate warming is most pronounced, there are questions about possible changes in the abundance and distribution of Plasmodium parasites, their vectors, and their impacts to avian hosts. To better understand the transmission of Plasmodium among local birds and to...
Authors
Matthew M. Smith, Caroline R. Van Hemert, Colleen M. Handel

San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018 San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP), administered by the San Francisco Estuary Institute, is a large-scale effort to monitor contaminant trends in water, sediment, fish, and birds throughout San Francisco Bay (San Francisco Estuary Institute, 2016). As part of the RMP and the U.S. Geological Survey (USGS) long-term Wildlife Contaminants Program...
Authors
Joshua T. Ackerman, C. Alex Hartman, Mark P. Herzog, Matthew Toney

Climate adaptation Science Centers—Annual report for 2018 Climate adaptation Science Centers—Annual report for 2018

2018 marked the 10-year anniversary of the establishment of the U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center! With the passage of the fiscal year 2018 budget on March 23, 2018, our program name was changed from the National Climate Change and Wildlife Science Center to the National Climate Adaptation Science Center (NCASC). The eight regional...
Authors
Elda Varela Minder

Seasonal development of the coccidian parasite Goussia bayae and hepatobiliary histopathology in white perch Morone americana from Chesapeake Bay Seasonal development of the coccidian parasite Goussia bayae and hepatobiliary histopathology in white perch Morone americana from Chesapeake Bay

The coccidium Goussia bayae infects the gallbladder and bile ducts of white perch Morone americana from Chesapeake Bay, USA. Seasonal changes in coccidian infections were analyzed from bile specimens of 1588 fish from the Choptank River during 2016-2018 using wet mount preparations with a Sedgwick-Rafter counting chamber. Histopathology of the gallbladder and liver was analyzed from a...
Authors
Mark A Matsche, Vicki S. Blazer, Patricia M. Mazik

Atrazine induced transgenerational reproductive effects in medaka (Oryzias latipes) Atrazine induced transgenerational reproductive effects in medaka (Oryzias latipes)

Atrazine is presently one of the most abundantly used herbicides in the United States, and a common contaminant of natural water bodies and drinking waters in high-use areas. Dysregulation of reproductive processes has been demonstrated in atrazine exposed fish, including alteration of key endocrine pathways on hypothalamic-pituitary-gonadal (HPG) axis. However, the potential for...
Authors
Jacob A. Cleary, Donald E. Tillitt, Fredrick S. vom Saal, Diane Nicks, Rachel Claunch, Ramji K. Bhandari

Sea-cliff bedstraw (Galium buxifolium) patterns and trends, 2005–14, on Santa Cruz and San Miguel Islands, Channel Islands National Park, California Sea-cliff bedstraw (Galium buxifolium) patterns and trends, 2005–14, on Santa Cruz and San Miguel Islands, Channel Islands National Park, California

Sea-cliff bedstraw (Galium buxifolium [Rubiaceae]) is a delicate dioecious subshrub endemic to Santa Cruz and San Miguel Islands, in the northern California Channel Islands. It was listed as endangered in 1997 under the Federal Endangered Species Act, threatened by soil loss, habitat alteration, and herbivory from more than a century of ranching land use. At the time of listing, there...
Authors
Kathryn McEachern, Katherine A. Chess, Karen Flagg, Kenneth G. Niessen

Non-native plants have greater impacts because of differing per-capita effects and non-linear abundance-impact curves Non-native plants have greater impacts because of differing per-capita effects and non-linear abundance-impact curves

Invasive, non-native species can have tremendous impacts on biotic communities, where they reduce the abundance and diversity of local species. However, it remains unclear whether impacts of non-native species arise from their high abundance or whether each non-native individual has a disproportionate impact – i.e., a higher per-capita effect – on co-occurring species compared to impacts...
Authors
Ian S. Pearse, Helen Sofaer, David N. Zaya, Greg Spyreas

Songbird feathers as indicators of mercury exposure: High variability and low predictive power suggest limitations Songbird feathers as indicators of mercury exposure: High variability and low predictive power suggest limitations

Although feathers are commonly used to monitor mercury (Hg) in avian populations, their reliability as a sampling matrix has not been thoroughly assessed for many avian species, including most songbirds (Order Passeriformes). To better understand relationships between total Hg (THg) concentrations in feathers and other tissues for birds in the thrush and sparrow families, we (1) examined...
Authors
Katherine E. Low, Danielle K. Ramsden, Allyson K. Jackson, Colleen Emery, W. Douglas Robinson, Jim Randolph, Collin A. Eagles-Smith

The pathogenesis of H7 highly pathogenic avian influenza viruses in Lesser Scaup (Aythya affinis) The pathogenesis of H7 highly pathogenic avian influenza viruses in Lesser Scaup (Aythya affinis)

Waterfowl are the natural hosts of avian influenza virus (AIV), and through migration spread the virus worldwide. Most AIVs carried by wild waterfowl are low pathogenic strains; however, Goose/Guangdong/1996 lineage clade 2.3.4.4 H5 highly pathogenic (HP) AIV now appears to be endemic in wild birds in much of the Eastern Hemisphere. Most research efforts studying AIV pathogenicity in...
Authors
Christopher B. Stephens, Diann Prosser, Mary J. Pantin-Jackwood, Alicia Berlin, Erica Spackman

Spatially explicit modelling of floodplain forest succession: Interactions among flood inundation, forest successional processes, and other disturbances in the Upper Mississippi River floodplain, USA Spatially explicit modelling of floodplain forest succession: Interactions among flood inundation, forest successional processes, and other disturbances in the Upper Mississippi River floodplain, USA

Simulation models are often used to identify hydrologic regimes suitable for different riparian or floodplain tree species. However, most existing models pay little attention to forest successional processes or other disturbances that may interact with the hydrologic regime of river systems to alter forest dynamics in space and time. In this study, we introduce a flood disturbance module...
Authors
Nathan R. De Jager, Molly Van Appledorn, Timothy J. Fox, Jason J. Rohweder, Lyle J. Guyon, Andrew R. Meier, Robert J. Cosgriff, Benjamin J. Vandermyde
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