Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42878
Metabarcoding assays for the detection of freshwater mussels (Unionida) with environmental DNA Metabarcoding assays for the detection of freshwater mussels (Unionida) with environmental DNA
Freshwater mussels of the order Unionida are a widely distributed taxon that are important in maintaining freshwater ecosystems and are also highly imperiled throughout the world. Monitoring of mussel populations with environmental DNA (eDNA) is an attractive alternative to traditional methods because it is noninvasive and requires less labor and taxonomic knowledge from field personnel...
Authors
Katy E. Klymus, Catherine A. Richter, Nathan Thompson, Jo Ellen Hinck, Jess W. Jones
Time-to-detection occupancy methods: Performance and utility for improving efficiency of surveys Time-to-detection occupancy methods: Performance and utility for improving efficiency of surveys
Occupancy methods propelled the quantitative study of species distributions forward by separating the observation process, or the imperfect detectability of species, from the ecological processes of interest governing species distributions. Occupancy studies come at a cost, however: the collection of additional data to account for nondetections at sites where the species is present. The...
Authors
Brian J. Halstead, Jonathan P. Rose, Patrick M. Kleeman
Whitebark pine in the national parks of the Pacific states: An assessment of population vulnerability Whitebark pine in the national parks of the Pacific states: An assessment of population vulnerability
Whitebark pine (Pinus albicaulis) is a long-lived tree found in high-elevation forests of western North America that is declining due to the non-native white pine blister rust (Cronartium ribicola) and climate-driven outbreaks of mountain pine beetle (Dendroctonus ponderosae; MPB). The National Park Service established a monitoring program for whitebark pine in seven parks, including...
Authors
Erik S Jules, Phillip J. van Mantgem, Benjamin G Iberle, Jonathan C B Nesmith, Regina Rochefort
Ecology and management of plague in diverse communities of rodents and fleas Ecology and management of plague in diverse communities of rodents and fleas
Plague originated in Asia as a flea-borne zoonosis of mammalian hosts. Today, the disease is distributed nearly worldwide. In western United States of America, plague is maintained, transmitted, and amplified in diverse communities of rodents and fleas. We examined flea diversity on three species of prairie dogs (Cynomys spp., PDs) and six species of sympatric small rodents in Montana...
Authors
David A. Eads, Dean E. Biggins, Kenneth L. Gage
Assessment of Ambystomatid salamander populations and their breeding habitats in the Delaware Water Gap National Recreation Area Assessment of Ambystomatid salamander populations and their breeding habitats in the Delaware Water Gap National Recreation Area
This report presents abundance and occurrence data for three species of ambystomad salamanders (Ambystoma maculatum, A. jeffersonianum, and A. opacum) collected over a 3-year period (2000, 2001, and 2002) at 200 potentional breeding sies within the Delaware Water Gap National Recreation Area (DEWA). In addition, numerous measures of inpond, near-pond, and landscape attributes were...
Authors
Craig D. Snyder, John A. Young, James T. Julian, Tim L. King, Shanon E. Julian
Warming and microbial uptake influence the fate of added soil carbon across a Hawai'ian weathering gradient Warming and microbial uptake influence the fate of added soil carbon across a Hawai'ian weathering gradient
Tropical forest soils contain some of the largest carbon (C) stocks on Earth, yet the effects of warming on the fate of fresh C entering tropical soils are still poorly understood. This research sought to understand how the fate of fresh C entering soils is influenced by warming, soil weathering status, and C chemistry. We hypothesized that compounds that are quickly incorporated into...
Authors
Avishesh Neupane, Sasha C. Reed, Daniela F. Cusack
Influence of water temperature and biotic interactions on the distribution of westslope cutthroat trout (Oncorhynchus clarkii lewisi) in a population stronghold under climate change Influence of water temperature and biotic interactions on the distribution of westslope cutthroat trout (Oncorhynchus clarkii lewisi) in a population stronghold under climate change
Climate warming is expected to have substantial impacts on native trout across the Rocky Mountains, but there is little understanding of how these changes affect future distributions of co-occurring native fishes within population strongholds. We used mixed-effects logistic regression to investigate the role of abiotic (e.g., temperature) and biotic factors (bull trout presence...
Authors
Kadie Heinle, Lisa A Eby, Clint C. Muhlfeld, Amber Steed, Leslie Jones, Vincent S. D’Angelo, Andrew R. Whiteley, Mark Hubblewhite
Small mammal responses to wetland restoration in the Greater Everglades ecosystem Small mammal responses to wetland restoration in the Greater Everglades ecosystem
Wetlands have experienced dramatic losses in extent around the world, disrupting ecosystem function, habitat, and biodiversity. In Florida’s Greater Everglades, a massive restoration effort costing billions of dollars and spanning multiple decades is underway. As Everglades restoration is implemented in incremental projects, scientists and planners monitor the outcomes of projects. In...
Authors
Stephanie Romanach, Laura D’Acunto, Julia Chapman, Matthew R Hanson
A comparison of plant communities in restored, old field, and remnant coastal prairies A comparison of plant communities in restored, old field, and remnant coastal prairies
Temperate grasslands are experiencing worldwide declines due to habitat conversion. Grassland restoration efforts are employed to compensate for these losses. However, there is a need to better understand the ecological effects of grassland restoration and management practices. We investigated the effects of three different grassland management regimes on plant communities of coastal...
Authors
Laura Feher, Larry Allain, Michael Osland, Elisabeth Pigott, Christopher Reid, Nicholas Latiolais
Review of trap-and-haul for managing Pacific salmonids (Oncorhynchus spp.) in impounded river systems Review of trap-and-haul for managing Pacific salmonids (Oncorhynchus spp.) in impounded river systems
High-head dams are migration barriers for Pacific salmon Oncorhynchus spp. in many river systems and recovery measures for impacted stocks are limited. Trap-and-haul has been widely used in attempts to facilitate recovery but information from existing programs has not been synthesized to inform improvements to aid recovery of salmonids in systems with high-head dams. We reviewed 17 trap...
Authors
Tobias J. Kock, John W. Ferguson, Matthew L. Keefer, Carl B. Schreck
Evaluating wildlife translocations using genomics: A bighorn sheep case study Evaluating wildlife translocations using genomics: A bighorn sheep case study
Wildlife restoration often involves translocation efforts to reintroduce species and supplement small, fragmented populations. We examined the genomic consequences of bighorn sheep (Ovis canadensis) translocations and population isolation to enhance understanding of evolutionary processes that affect population genetics and inform future restoration strategies. We conducted a population...
Authors
Elizabeth P Flesch, Tabitha A. Graves, Jennifer Thomson, Kelly Proffitt, P.J. White, Thomas R Stephenson, Robert A. Garrott
Evaluating natural experiments in ecology: Using synthetic controls in assessments of remotely sensed land treatments Evaluating natural experiments in ecology: Using synthetic controls in assessments of remotely sensed land treatments
Many important ecological phenomena occur on large spatial scales and/or are unplanned and thus do not easily fit within analytical frameworks that rely on randomization, replication, and interspersed a priori controls for statistical comparison. Analyses of such large‐scale, natural experiments are common in the health and econometrics literature, where techniques have been developed to...
Authors
Stephen E. Fick, Travis W. Nauman, Colby C. Brungard, Michael C. Duniway