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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42712

USGS enterprise tools for efficient and effective management of science data USGS enterprise tools for efficient and effective management of science data

The Science Data Management Branch (SDM) of the U.S. Geological Survey (USGS) provides data management expertise and leadership and develops guidance and tools to support the USGS in providing the nation with reliable scientific information on the basis of which to describe the Earth. The SDM suite of tools supports the USGS Data Management Lifecycle by facilitating quality assurance...
Authors
Vivian B. Hutchison, Amanda Liford, Ricardo McClees-Funinan, Lisa Zolly, Drew Ignizio, Madison Langseth, Brandon Serna, Elizabeth Sellers, Leslie Hsu, Tamar Norkin, Marcia McNiff, Grace C. Donovan

The pathogenesis of a North American H5N2 clade 2.3.4.4 group A highly pathogenic avian influenza virus in surf scoters (Melanitta perspicillata) The pathogenesis of a North American H5N2 clade 2.3.4.4 group A highly pathogenic avian influenza virus in surf scoters (Melanitta perspicillata)

Background Aquatic waterfowl, particularly those in the order Anseriformes and Charadriiformes, are the ecological reservoir of avian influenza viruses (AIVs). Dabbling ducks play a recognized role in the maintenance and transmission of AIVs. Furthermore, the pathogenesis of highly pathogenic AIV (HPAIV) in dabbling ducks is well characterized. In contrast, the role of diving ducks in...
Authors
Jasmine M. Luczo, Diann Prosser, Mary J. Pantin-Jackwood, Alicia Berlin, Erica Spackman

The effects of management practices on grassland birds—Prairie Falcon (Falco mexicanus) The effects of management practices on grassland birds—Prairie Falcon (Falco mexicanus)

Keys to Prairie Falcon (Falco mexicanus) management include maintaining cliffs with suitable recesses for use as nest sites (that is, the substrate that supports the nest or the specific location of the nest on the landscape), protecting nest sites from human disturbance by designating buffer zones, and maintaining open landscapes and habitats that support populations of ground squirrels
Authors
John P. DeLong, Karen Steenhof

How parasite exposure and time interact to determine Australapatemon burti (Trematoda: Digenea) infections in second intermediate hosts (Erpobdella microstoma) (Hirudinea: Erpodellidae) How parasite exposure and time interact to determine Australapatemon burti (Trematoda: Digenea) infections in second intermediate hosts (Erpobdella microstoma) (Hirudinea: Erpodellidae)

Australapatemon spp. are cosmopolitan trematodes that infect freshwater snails, aquatic leeches, and birds. Despite their broad geographic distribution, relatively little is known about interactions between Australapatemon spp. and their leech hosts, particularly under experimental conditions and in natural settings. We used experimental exposures to determine how Australapatemon burti...
Authors
Dana Marie Calhoun, Evan Esfahani, Sean A. Locke, William E. Moser, Pieter T. J. Johnson

Multidecadal comparison of Red-footed Booby Sula sula diet at Ulupa'u Crater, O'ahu, Hawai'i Multidecadal comparison of Red-footed Booby Sula sula diet at Ulupa'u Crater, O'ahu, Hawai'i

We describe the diet of Red-footed Boobies Sula sula nesting at Ulupaʻu Crater, Oʻahu, Hawaiʻi based on 106 regurgitations collected during 2014 and 2015. We also compare our results to a diet study at this colony five decades earlier. Both studies indicate that flying squid (Ommastrephidae) and flyingfish (Exocoetidae) are important prey for this population while provisioning chicks. In
Authors
Sarah E. Donahue, Josh Adams, K David Hyrenbach

Linking plant and animal functional diversity with an experimental community restoration in a Hawaiian lowland wet forest Linking plant and animal functional diversity with an experimental community restoration in a Hawaiian lowland wet forest

Testing how plant restoration influences animal taxonomic and functional diversity can shift restoration projects beyond mainly plant community considerations. We incorporated multi-trophic interactions into restoration by describing an ongoing functional trait-based restoration experiment in Hawaiian lowland tropical wet forest (Liko Nā Pilina Experiment), where litter arthropods are...
Authors
Rebecca Ostertag, Esther Sebastian-Gonzalez, Robert W. Peck, Trebor Hall, Jihoo Kim, Nicole DiManno, Donald Rayonne, Susan Cordell, Paul C. Banko, Amanda Uowolo

Occurrence and spatiotemporal dynamics of pharmaceuticals in a temperate-region wastewater effluent-dominated stream: Variable inputs and differential attenuation yield evolving complex exposure mixtures Occurrence and spatiotemporal dynamics of pharmaceuticals in a temperate-region wastewater effluent-dominated stream: Variable inputs and differential attenuation yield evolving complex exposure mixtures

Effluent-dominated streams are becoming increasingly common in temperate regions and generate complex pharmaceutical mixture exposure conditions that may impact aquatic organisms via drug–drug interactions. Here, we quantified spatiotemporal pharmaceutical exposure concentrations and composition mixture dynamics during baseflow conditions at four sites in a temperate-region effluent...
Authors
Hui Zhi, Dana W. Kolpin, R. D. Klaper, Luke R. Iwanowicz, Shannon M. Meppelink, Gregory H. LeFevre

Modeling occupancy of rare stream fish species in the upper Cumberland and Kentucky River Basins Modeling occupancy of rare stream fish species in the upper Cumberland and Kentucky River Basins

Biological conservation often requires an understanding of how environmental conditions affect species occurrence and detection probabilities. We used a hierarchical framework to evaluate these effects for several Appalachian stream fish species of conservation concern: Chrosomus cumberlandensis (BSD; blackside dace), Etheostoma sagitta (CAD; Cumberland arrow darter), and Etheostoma...
Authors
Nathaniel P. Hitt, Karli M. Rogers, Karmann Kessler, Hannah E. Macmillan

Seasonality of acarological risk of exposure to Borrelia miyamotoi from questing life stages of Ixodes scapularis collected from Wisconsin and Massachusetts, USA Seasonality of acarological risk of exposure to Borrelia miyamotoi from questing life stages of Ixodes scapularis collected from Wisconsin and Massachusetts, USA

Measures of acarological risk of exposure to Ixodes scapularis-borne disease agents typically focus on nymphs; however, the relapsing fever group spirochete, Borrelia miyamotoi can be transmitted transovarially, and I. scapularis larvae are capable of transmitting B. miyamotoi to their hosts. To quantify the larval contribution to acarological risk, relative to nymphs and adults, we...
Authors
Seungeun Han, Graham J. Hickling, Nicholas H. Ogden, Howard S. Ginsberg, Vishvapali Kobbekaduwa, Eric L. Rulison, Lorenza Beati, Jean I. Tsao

Genetic analysis of the diet of red‐footed boobies (Sula sula) provisioning chicks at Ulupa'u Crater, O'ahu Genetic analysis of the diet of red‐footed boobies (Sula sula) provisioning chicks at Ulupa'u Crater, O'ahu

The diet of red‐footed boobies (Sula sula) provisioning chicks was quantified using 106 regurgitations collected from 81 adults over two study years with contrasting oceanographic conditions: 2014 and 2015.A total of 1,049 prey items were sorted into three broad categories (fish, squid, and other, consisting of highly‐digested ‘mush’ and parasitic isopods) and assigned a categorical...
Authors
Sarah E. Donahue, Josh Adams, Mark A Renshaw, K David Hyrenbach

Net-spinning caddisfly distribution in large regulated rivers Net-spinning caddisfly distribution in large regulated rivers

Most of the world's large rivers are dammed for the purposes of water storage, flood control, and power production. Damming rivers fundamentally alters water temperature and flows in tailwater ecosystems, which in turn affects the presence and abundance of downstream biota.We collaborated with more than 200 citizen scientists to collect 2,194 light trap samples across 2 years and more...
Authors
Anya Metcalfe, Jeffrey Muehlbauer, Theodore Kennedy, Charles Yackulic, Kimberly L. Dibble, Jane C. Marks

Neonicotinoid insecticide concentrations in agricultural wetlands and associations with aquatic invertebrate communities Neonicotinoid insecticide concentrations in agricultural wetlands and associations with aquatic invertebrate communities

Neonicotinoids are considered a superior insecticide for agricultural pest management, although their impacts on non-target insects is a rising concern. Aside from laboratory and mesocosm studies, limited research has been directed towards the role neonicotinoids may have in structuring aquatic invertebrate communities in field settings. Therefore, we simultaneously collected aquatic...
Authors
T.J. Schepker, Elisabeth B. Webb, Donald E. Tillitt, T. LaGrange
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