Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 42712
Human interactions with sirenians (manatees and dugongs) Human interactions with sirenians (manatees and dugongs)
There are three extant sirenian species of the Trichechidae family and one living Dugongidae family member. Given their close ties to coastal and often urbanized habitats, sirenians are exposed to many types of anthropogenic activities that result in challenges to their well-being, poor health, and even death. In the wild, they are exposed to direct and indirect local pressures as well...
Authors
Robert K. Bonde, Mark Flint
Long-term video surveillance and automated analyses reveal arousal patterns in groups of hibernating bats Long-term video surveillance and automated analyses reveal arousal patterns in groups of hibernating bats
Understanding natural behaviours is essential to determining how animals deal with new threats (e.g. emerging diseases). However, natural behaviours of animals with cryptic lifestyles, like hibernating bats, are often poorly characterized. White-nose syndrome (WNS) is an unprecedented disease threatening multiple species of hibernating bats, and pathogen-induced changes to host behaviour...
Authors
David T. S. Hayman, Paul M. Cryan, Paul D. Fricker, Nicholas G. Dannemiller
Assessing welfare of individual sirenians in the wild and in captivity Assessing welfare of individual sirenians in the wild and in captivity
Assessing the welfare of wild populations of sirenians has required a “generalist” approach. The outcome has been a subjective decision as to whether what the observers are witnessing in an individual or group of animals is normal and whether that has positive or negative consequences. The understanding of sirenian welfare requirements, and a decision process for whether to support and...
Authors
Mark Flint, Robert K. Bonde
Sparrow nest survival in relation to prescribed fire and woody plant invasion in a northern mixed-grass prairie Sparrow nest survival in relation to prescribed fire and woody plant invasion in a northern mixed-grass prairie
Prescribed fire is used to reverse invasion by woody vegetation on grasslands, but managers often are uncertain whether influences of shrub and tree reduction outweigh potential effects of fire on nest survival of grassland birds. During the 2001–2003 breeding seasons, we examined relationships of prescribed fire and woody vegetation to nest survival of clay-colored sparrow (Spizella...
Authors
Robert K. Murphy, Terry L. Shaffer, Todd A. Grant, James L. Derrig, Cory S. Rubin, Courtney K. Kerns
Used-habitat calibration plots: A new procedure for validating species distribution, resource selection, and step-selection models Used-habitat calibration plots: A new procedure for validating species distribution, resource selection, and step-selection models
“Species distribution modeling” was recently ranked as one of the top five “research fronts” in ecology and the environmental sciences by ISI's Essential Science Indicators (Renner and Warton 2013), reflecting the importance of predicting how species distributions will respond to anthropogenic change. Unfortunately, species distribution models (SDMs) often perform poorly when applied to...
Authors
John R. Fieberg, James D. Forester, Garrett M. Street, Douglas H. Johnson, Althea A. ArchMiller, Jason Matthiopoulos
A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections A 184-year record of river meander migration from tree rings, aerial imagery, and cross sections
Channel migration is the primary mechanism of floodplain turnover in meandering rivers and is essential to the persistence of riparian ecosystems. Channel migration is driven by river flows, but short-term records cannot disentangle the effects of land use, flow diversion, past floods, and climate change. We used three data sets to quantify nearly two centuries of channel migration on...
Authors
Derek M. Schook, Sara L. Rathburn, Jonathan M. Friedman, J. Marshall Wolf
Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest Methods for measuring bird-mediated seed rain: Insights from a Hawaiian mesic forest
Amount and diversity of bird-dispersed seed rain play important roles in determining forest composition, yet neither is easy to quantify. The complex ecological processes that influence seed movement make the best approach highly context specific. Although recent advances in seed rain theory emphasize quantifying source-specific seed shadows, many ecological questions can be addressed u...
Authors
Eli Rose, Meredith Stewart, Andrew Brinkman, Eben H. Paxton, Stephanie G. Yelenik
Evidence of absence (v2.0) software user guide Evidence of absence (v2.0) software user guide
Evidence of Absence software (EoA) is a user-friendly software application for estimating bird and bat fatalities at wind farms and for designing search protocols. The software is particularly useful in addressing whether the number of fatalities is below a given threshold and what search parameters are needed to give assurance that thresholds were not exceeded. The software also...
Authors
Daniel Dalthorp, Manuela M. Huso, David Dail
Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds Fifty-eighth supplement to the American Ornithologists' Union: Check-list of North American Birds
This is the 17th supplement since publication of the 7th edition of the Check-list of North American Birds (American Ornithologists' Union [AOU] 1998). It summarizes decisions made between April 15, 2016, and April 15, 2017, by the AOS's Committee on Classification and Nomenclature—North and Middle America. The Committee has continued to operate in the manner outlined in the 42nd...
Authors
Terry Chesser, Kevin J Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Pamela C. Rasmussen, J.V. Remsen, James D. Rising, Douglas F. Stotz, Kevin Winker
Historical changes in organic matter input to the muddy sediments along the Zhejiang-Fujian Coast, China over the past 160 years Historical changes in organic matter input to the muddy sediments along the Zhejiang-Fujian Coast, China over the past 160 years
The burial of sedimentary organic matter (SOM) in the large river-influenced estuarine-coastal regions is affected by hydrodynamic sorting, diagenesis and human activities. Typically, the inner shelf region of the East China Sea is a major carbon sink of the Yangtze River-derived fine-grained sediments. Most of the previous work concentrated on the studies of surface sediments or used a...
Authors
Li-lei Chen, Jian Liu, Lei Xing, Ken W. Krauss, Jia-sheng Wang, Gang Xu, Li Li
Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity Cambrian origin of the CYP27C1-mediated vitamin A1-to-A2 switch, a key mechanism of vertebrate sensory plasticity
The spectral composition of ambient light varies across both space and time. Many species of jawed vertebrates adapt to this variation by tuning the sensitivity of their photoreceptors via the expression of CYP27C1, an enzyme that converts vitamin A1 into vitamin A2, thereby shifting the ratio of vitamin A1-based rhodopsin to red-shifted vitamin A2-based porphyropsin in the eye. Here, we...
Authors
Ala Morshedian, Matthew B. Toomery, Gabriel E. Pollock, Rikard Frederiksen, Jennifer Enright, Stephen D. McCormick, M. Carter Cornwall, Gordon L. Fain, Joseph C. Corbo
Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures Acquisition of Borrelia burgdorferi infection by larval Ixodes scapularis (Acari: Ixodidae) associated with engorgement measures
Measuring rates of acquisition of the Lyme disease pathogen, Borrelia burgdorferi sensu lato Johnson, Schmid, Hyde, Steigerwalt & Brenner, by the larval stage of Ixodes scapularis Say is a useful tool for xenodiagnoses of B. burgdorferi in vertebrate hosts. In the nymphal and adult stages of I. scapularis, the duration of attachment to hosts has been shown to predict both body...
Authors
Janelle Couret, M.C. Dyer, T.N. Mather, S. Han, J.I. Tsao, R.A. LeBrun, Howard S. Ginsberg