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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42715

Essential information: Uncertainty and optimal control of Ebola outbreaks Essential information: Uncertainty and optimal control of Ebola outbreaks

Early resolution of uncertainty during an epidemic outbreak can lead to rapid and efficient decision making, provided that the uncertainty affects prioritization of actions. The wide range in caseload projections for the 2014 Ebola outbreak caused great concern and debate about the utility of models. By coding and running 37 published Ebola models with five candidate interventions, we...
Authors
Shou-Li Li, Ottar Bjornstad, Matthew J. Ferrari, Riley Mummah, Michael C. Runge, Christopher J. Fonnesbeck, Michael J. Tildesley, William J. M. Probert, Katriona Shea

Light climate and dissolved organic carbon concentration influence species-specific changes in fish zooplanktivory Light climate and dissolved organic carbon concentration influence species-specific changes in fish zooplanktivory

Dissolved organic carbon (DOC) in lakes reduces light penetration and limits fish production in low nutrient lakes, reportedly via reduced primary and secondary production. Alternatively, DOC and light reductions could influence fish by altering their visual feeding. Previous studies report mixed effects of DOC on feeding rates of zooplanktivorous fish, but most investigators tested...
Authors
Brian Weidel, Katherine Baglini, Stuart E. Jones, Patrick T. Kelly, Christopher T. Solomon, Jacob A. Zwart

Trace element contamination in feather and tissue samples from Anna’s hummingbirds Trace element contamination in feather and tissue samples from Anna’s hummingbirds

Trace element contamination (17 elements; Be, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Mo, Cd, Ba, Hg, Tl, and Pb) of live (feather samples only) and deceased (feather and tissue samples) Anna's hummingbirds (Calypte anna) was evaluated. Samples were analyzed using inductively coupled plasma-mass spectrometry (ICP-MS; 17 elements) and atomic absorption spectrophotometry (Hg only). Mean...
Authors
Nicole A. Mikoni, Robert H. Poppenga, Joshua T. Ackerman, Janet E. Foley, Jenny Hazlehurst, Guthrum Purdin, Linda Aston, Sabine Hargrave, Karen Jelks, Lisa A. Tell

California Spotted Owl (Strix occidentalis occidentalis) habitat use patterns in a burned landscape California Spotted Owl (Strix occidentalis occidentalis) habitat use patterns in a burned landscape

Fire is a dynamic ecosystem process of mixed-conifer forests of the Sierra Nevada, but there is limited scientific information addressing wildlife habitat use in burned landscapes. Recent studies have presented contradictory information regarding the effects of stand-replacing wildfires on Spotted Owls (Strix occidentalis) and their habitat. While fire promotes heterogeneous forest...
Authors
Stephanie Eyes, Susan L. Roberts, Matthew D. Johnson

The contribution of lakes to global inland fisheries harvest The contribution of lakes to global inland fisheries harvest

Freshwater ecosystems provide numerous services for communities worldwide, including irrigation, hydropower, and municipal water; however, the services provided by inland fisheries – nourishment, employment, and recreational opportunities – are often comparatively undervalued. We provide an independent estimate of global lake harvest to improve biological and socioeconomic assessments of...
Authors
Andrew M. Deines, David B. Bunnell, Mark W. Rogers, David Bennion, Whitney Woelmer, Michael J. Sayers, Amanda G. Grimm, Robert A. Shuchman, Zachary B. Raymer, Colin N. Brooks, Justin G. Mychek-Londer, William W. Taylor, Beard

Using dynamic population simulations to extend resource selection analyses and prioritize habitats for conservation Using dynamic population simulations to extend resource selection analyses and prioritize habitats for conservation

Prioritizing habitats for conservation is a challenging task, particularly for species with fluctuating populations and seasonally dynamic habitat needs. Although the use of resource selection models to identify and prioritize habitat for conservation is increasingly common, their ability to characterize important long-term habitats for dynamic populations are variable. To examine how...
Authors
Julie A. Heinrichs, Cameron L. Aldridge, Michael S. O’Donnell, Nathan Schumaker

Use of electricity to sedate Lake Trout for intracoelomic implantation of electronic transmitters Use of electricity to sedate Lake Trout for intracoelomic implantation of electronic transmitters

Use of telemetry data to inform fisheries conservation and management is becoming increasingly common; as such, fish typically must be sedated before surgical implantation of transmitters into the coelom. Given that no widely available, immediate-release chemical sedative currently exists in North America, we investigated the feasibility of using electricity to sedate Lake Trout...
Authors
Matthew D. Faust, Christopher Vandergoot, Eric T. Hostnik, Thomas R. Binder, Julia L. Mida Hinderer, Jessica T. Ives, Charles C. Krueger

Spatial and temporal distribution of bull trout (Salvelinus confluentus)-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016 Spatial and temporal distribution of bull trout (Salvelinus confluentus)-size fish near the floating surface collector in the North Fork Reservoir, Oregon, 2016

Acoustic cameras were used to assess the behavior and abundance of bull trout (Salvelinus confluentus)-size fish at the entrance to the North Fork Reservoir juvenile fish floating surface collector (FSC). The purpose of the FSC is to collect downriver migrating juvenile salmonids at the North Fork Dam, and safely route them around the hydroelectric projects. The objective of the acoustic...
Authors
Noah S. Adams, Collin D. Smith

Tolerance to disturbance regulated by attractiveness of resources: A case study of desert bighorn sheep within the River Mountains, Nevada Tolerance to disturbance regulated by attractiveness of resources: A case study of desert bighorn sheep within the River Mountains, Nevada

Human activity may mimic predation risks for wildlife by causing abandonment of foraging sites and increasing expenditure of energy. Animals that can tolerate nonlethal disturbance may minimize these fitness costs. We examine this aspect of the risk—disturbance hypothesis by first analyzing recent habitat use of desert bighorn sheep relative to areas of attraction and disturbance. We...
Authors
Chris E. Lowrey, Kathleen M. Longshore

In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas) In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas)

Fibropapillomatosis (FP) is a tumor disease of marine turtles associated with Chelonid herpesvirus 5 (ChHV5) that has historically been refractory to growth in tissue culture. Here, we show for the first time de novo formation of ChHV5-positive intranuclear inclusions in cultured green turtle cells, which is indicative for active lytic replication of the virus. The minimal requirements...
Authors
Thierry M. Work, Julie Dagenais, Tina Weatherby, George H. Balazs, Mathias Ackermann

Sylvatic plague vaccine partially protects prairie dogs (Cynomys spp.) in field trials Sylvatic plague vaccine partially protects prairie dogs (Cynomys spp.) in field trials

Sylvatic plague, caused by Yersinia pestis, frequently afflicts prairie dogs (Cynomys spp.), causing population declines and local extirpations. We tested the effectiveness of bait-delivered sylvatic plague vaccine (SPV) in prairie dog colonies on 29 paired placebo and treatment plots (1–59 ha in size; average 16.9 ha) in 7 western states from 2013 to 2015. We compared relative abundance...
Authors
Tonie E. Rocke, Daniel W. Tripp, Robin E. Russell, Rachel C. Abbott, Katherine Richgels, Marc R. Matchett, Dean E. Biggins, Randall Griebel, Greg Schroeder, Shaun M. Grassel, David R. Pipkin, Jennifer Cordova, Adam Kavalunas, Brian Maxfield, Jesse T. Boulerice, Michael W. Miller

Juvenile salmonid monitoring in the White Salmon River, Washington, post-Condit Dam removal, 2016 Juvenile salmonid monitoring in the White Salmon River, Washington, post-Condit Dam removal, 2016

Condit Dam, at river kilometer 5.3 on the White Salmon River, Washington, was breached in 2011 and removed completely in 2012, allowing anadromous salmonids access to habitat that had been blocked for nearly 100 years. A multi-agency workgroup concluded that the preferred salmonid restoration alternative was natural recolonization with monitoring to assess efficacy, followed by a...
Authors
Ian G. Jezorek, Jill M. Hardiman
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